A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening.

Autor: Elisée E; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Ducrot L; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Méheust R; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Bastard K; School of Pharmacy, Faculty of Medicine and Health, University of Sydney, Sydney, NSW, 2006, Australia., Fossey-Jouenne A; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Grogan G; York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK., Pelletier E; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Petit JL; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Stam M; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., de Berardinis V; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Zaparucha A; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France., Vallenet D; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France. vallenet@genoscope.cns.fr., Vergne-Vaxelaire C; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France. carine.vergne@genoscope.cns.fr.

Publikováno v: Nature communications [Nat Commun] 2024 Jun 10; Vol. 15 (1), pp. 4933. Date of Electronic Publication: 2024 Jun 10.

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century

Autor: Bremer E, Calteau A, Danchin A, Harwood C, Helmann JD, Médigue C, Palsson BO, Sekowska A, Vallenet D, Zuniga A, Zuniga C

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::91366fd6444427664692843fd98a620e

A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins.

Autor: Jabeur R; Limagrain Europe, Centre de recherche, Chappes, France., Guyon V; Vilmorin & Cie, Saint-Beauzire, France., Toth S; Integrated Pest Management Department, Hungarian University of Agriculture and Life Sciences-MATE, Godollo, Hungary.; CABI Switzerland, c/o Plant Protection and Soil Conservation Directorate, Hodmezovasarhely, Hungary., Pereira AE; Division of Plant Science & Technology, University of Missouri, Columbia, MO, United States of America., Huynh MP; Division of Plant Science & Technology, University of Missouri, Columbia, MO, United States of America., Selmani Z; Laboratoire de Biologie et Physiologie des Organismes, Faculté des Sciences Biologiques, Université des Sciences et de la Technologie Houari Boumediène, USTHB, Alger, Algérie., Boland E; Genective USA Corp, Champaign, IL, United States of America., Bosio M; Limagrain Europe, Centre de recherche, Chappes, France., Beuf L; Limagrain Europe, Centre de recherche, Chappes, France., Clark P; Genective USA Corp, Champaign, IL, United States of America., Vallenet D; LABGeM, Génomique Métabolique, CEA, Genoscope, Institut François Jacob, Université d'Evry, Université Paris-Saclay, CNRS, Evry, France., Achouak W; Aix Marseille Univ, CEA, CNRS, BIAM, LEMIRE, Saint Paul-Lez-Durance, France., Audiffrin C; Protéus, Nîmes, France., Torney F; Genective USA Corp, Champaign, IL, United States of America., Paul W; Limagrain Europe, Centre de recherche, Chappes, France., Heulin T; Aix Marseille Univ, CEA, CNRS, BIAM, LEMIRE, Saint Paul-Lez-Durance, France., Hibbard BE; USDA-ARS, Plant Genetics Research Unit, Univ. Missouri, Columbia, MO, United States of America., Toepfer S; CABI Switzerland, c/o Plant Protection and Soil Conservation Directorate, Hodmezovasarhely, Hungary., Sallaud C; Limagrain Europe, Centre de recherche, Chappes, France.

Publikováno v: PloS one [PLoS One] 2023 Feb 17; Vol. 18 (2), pp. e0267220. Date of Electronic Publication: 2023 Feb 17 (Print Publication: 2023).

A roadmap for the functional annotation of protein families: a community perspective.

Autor: de Crécy-Lagard V; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Amorin de Hegedus R; Genetics Institute, University of Florida, Gainesville, FL 32611, USA., Arighi C; Department of Computer and Information Sciences, University of Delaware, Newark, DE 19713, USA., Babor J; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Bateman A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK., Blaby I; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Blaby-Haas C; Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA., Bridge AJ; Swiss-Prot group, SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva 4 CH-1211, Switzerland., Burley SK; RCSB Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Cleveland S; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Colwell LJ; Departmenf of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK., Conesa A; Spanish National Research Council, Institute for Integrative Systems Biology, Paterna, Valencia 46980, Spain., Dallago C; TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology, i12, Boltzmannstr. 3, Garching/Munich 85748, Germany., Danchin A; School of Biomedical Sciences, Li KaShing Faculty of Medicine, The University of Hong Kong, 21 Sassoon Road, Pokfulam, SAR Hong Kong 999077, China., de Waard A; Research Collaboration Unit, Elsevier, Jericho, VT 05465, USA., Deutschbauer A; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Dias R; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Ding Y; Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, USA., Fang G; NYU-Shanghai, Shanghai 200120, China., Friedberg I; Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA 50011, USA., Gerlt J; Institute for Genomic Biology and Departments of Biochemistry and Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA., Goldford J; Physics of Living Systems, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Gorelik M; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Gyori BM; Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA., Henry C; Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA., Hutinet G; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Jaroch M; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Karp PD; Bioinformatics Research Group, SRI International, Menlo Park, CA 94025, USA., Kondratova L; Genetics Institute, University of Florida, Gainesville, FL 32611, USA., Lu Z; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), 8600 Rockville Pike, Bethesda, MD 20817, USA., Marchler-Bauer A; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), 8600 Rockville Pike, Bethesda, MD 20817, USA., Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK., McWhite C; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA., Moghe GD; Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA., Monaghan P; Department of Agricultural Education and Communication, University of Florida, Gainesville, FL 32611, USA., Morgat A; Swiss-Prot group, SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva 4 CH-1211, Switzerland., Mungall CJ; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Natale DA; Georgetown University Medical Center, Washington, DC 20007, USA., Nelson WC; Biological Sciences Division, Pacific Northwest National Laboratories, Richland, WA 99354, USA., O'Donoghue S; School of Biotechnology and Biomolecular Sciences, University of NSW, Sydney, NSW 2052, Australia., Orengo C; Department of Structural and Molecular Biology, University College London, London WC1E 6BT, UK., O'Toole KH; New England Biolabs, Ipswich, MA 01938, USA., Radivojac P; Khoury College of Computer Sciences, Northeastern University, Boston, MA 02115, USA., Reed C; Department of Microbiology and Cell Sciences, University of Florida, Gainesville, FL 32611, USA., Roberts RJ; New England Biolabs, Ipswich, MA 01938, USA., Rodionov D; Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA., Rodionova IA; Department of Bioengineering, Division of Engineering, University of California at San Diego, La Jolla, CA 92093-0412, USA., Rudolf JD; Department of Chemistry, University of Florida, Gainesville, FL 32611, USA., Saleh L; New England Biolabs, Ipswich, MA 01938, USA., Sheynkman G; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA., Thibaud-Nissen F; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), 8600 Rockville Pike, Bethesda, MD 20817, USA., Thomas PD; Department of Population and Public Health Sciences, University of Southern California, Los Angeles, CA 90033, USA., Uetz P; Center for Biological Data Science, Virginia Commonwealth University, Richmond, VA 23284, USA., Vallenet D; LABGeM, Génomique Métabolique, CEA, Genoscope, Institut François Jacob, Université d'Évry, Université Paris-Saclay, CNRS, Evry 91057, France., Carter EW; Department of Plant Pathology, University of Florida Citrus Research and Education Center, 700 Experiment Station Rd., Lake Alfred, FL 33850, USA., Weigele PR; New England Biolabs, Ipswich, MA 01938, USA., Wood V; Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK., Wood-Charlson EM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Xu J; Department of Plant Pathology, University of Florida Citrus Research and Education Center, 700 Experiment Station Rd., Lake Alfred, FL 33850, USA.

Publikováno v: Database : the journal of biological databases and curation [Database (Oxford)] 2022 Aug 12; Vol. 2022.

Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.

Autor: Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2021 Dec 10; Vol. 17 (12), pp. e1009687. Date of Electronic Publication: 2021 Dec 10 (Print Publication: 2021).