Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Valentin Antonescu"'
Autor:
Steven L. Salzberg, Daehwan Kim, Stephen J. Meltzer, Yulan Cheng, Xiquan Ke, Jee Hoon Song, Sariat Ibrahim, Zhenguo Sun, Hui Tian, Valentin Antonescu, Binbin Huang, John M. Abraham
Publikováno v:
Cancer. 123:1507-1515
BACKGROUND Novel fusion transcripts (FTs) caused by chromosomal rearrangement are common factors in the development of cancers. In the current study, the authors used massively parallel RNA sequencing to identify new FTs in colon cancers. METHODS RNA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7e1f46e80aa452082376a58d98b62725
https://doi.org/10.1002/cncr.30510
https://doi.org/10.1002/cncr.30510
Autor:
Steven L. Salzberg, Nadia N. Hansel, Albert M. Levin, Candelaria Vergara, Monica Campbell, Kathleen C. Barnes, Valentin Antonescu, Alvaro Mayorga, Victor E. Ortega, Esteban G. Burchard, Edwin Francisco Herrera-Paz, Cassandra Foster, Javier Marrugo, Michelle Daya, Margaret A. Taub, Christopher O. Olopade, Georgia M. Dunston, Marilyn G. Foreman, Mezbah U. Faruque, Carole Ober, Eugene R. Bleecker, Jennifer Knight-Madden, Rasika A. Mathias, Sameer Chavan, Deborah A. Meyers, Dan L. Nicolae, Lorraine B. Ware, Maria Yazdanbakhsh, Ingo Ruczinski, Celeste Eng, Daniela Puiu, Terri H. Beaty, L. Keoki Williams, Harold Watson, Nicholas Rafaels, James G. Wilson, Leslie A. Lange, Tina V. Hartert, Olufunmilayo I. Olopade, Maria Ilma Araujo, Luis Caraballo, Juliet Forman, Rachel M. Sherman, Ricardo Riccio Oliveira, Meher Preethi Boorgula, Jean G. Ford
Publikováno v:
Nature Genetics, 51(1), 30
We used a deeply sequenced dataset of 910 individuals, all of African descent, to construct a set of DNA sequences that is present in these individuals but missing from the reference human genome. We aligned 1.19 trillion reads from the 910 individua
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::51b622aaf04a13b3e284df6ffdbd3e01
https://pubmed.ncbi.nlm.nih.gov/30700891
https://pubmed.ncbi.nlm.nih.gov/30700891
Autor:
Mary Armanios, Erin M. Parry, Valentin Antonescu, Susan E. Stanley, Dustin L. Gable, Sara E. Khalil, Liliana Florea
Publikováno v:
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 12(11)
Introduction Although lung cancer is generally thought to be environmentally provoked, anecdotal familial clustering has been reported, suggesting that there may be genetic susceptibility factors. We systematically tested whether germline mutations i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::592925fdc533bb86051c849376713bf8
https://pubmed.ncbi.nlm.nih.gov/28843361
https://pubmed.ncbi.nlm.nih.gov/28843361
Autor:
Monica Campbell, Alvaro Mayorga, Carole Ober, Candelaria Vergara, Jennifer Knight-Madden, James G. Wilson, Dan L. Nicolae, Margaret A. Taub, Ricardo Riccio Oliveira, Valentin Antonescu, Michelle Daya, Rachel M. Sherman, Mezbah U. Faruque, Georgia M. Dunston, Daniela Puiu, Ingo Ruczinski, Sameer Chavan, Kathleen C. Barnes, Esteban G. Burchard, Deborah A. Meyers, Terri H. Beaty, Maria Yazdanbakhsh, Christopher O. Olopade, Eugene R. Bleecker, Marilyn G. Foreman, Harold Watson, Nicholas Rafaels, Steven L. Salzberg, Nadia N. Hansel, Meher Preethi Boorgula, Victor E. Ortega, Lorraine B. Ware, Albert M. Levin, Cassandra Foster, Edwin Francisco Herrera-Paz, Javier Marrugo, Celeste Eng, L. Keoki Williams, Rasika A. Mathias, Luis Caraballo, Jean G. Ford, Leslie A. Lange, Juliet Forman, Tina V. Hartert, Olufunmilayo I. Olopade, Maria Ilma Araujo
Publikováno v:
Nature Genetics. 51:364-364
In the version of this article initially published, the statement "there are no pan-genomes for any other animal or plant species" was incorrect. The statement has been corrected to "there are no reported pan-genomes for any other animal species, to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::da5173d331a789b03b24ff78bfae7c0e
https://doi.org/10.1038/s41588-018-0335-1
https://doi.org/10.1038/s41588-018-0335-1
Autor:
Zhenguo, Sun, Xiquan, Ke, Steven L, Salzberg, Daehwan, Kim, Valentin, Antonescu, Yulan, Cheng, Binbin, Huang, Jee Hoon, Song, John M, Abraham, Sariat, Ibrahim, Hui, Tian, Stephen J, Meltzer
Publikováno v:
Cancer. 123(9)
Novel fusion transcripts (FTs) caused by chromosomal rearrangement are common factors in the development of cancers. In the current study, the authors used massively parallel RNA sequencing to identify new FTs in colon cancers.RNA sequencing (RNA-Seq
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::f44a1f851dbaa78ff489a7dda3128d9b
https://pubmed.ncbi.nlm.nih.gov/28081303
https://pubmed.ncbi.nlm.nih.gov/28081303
Autor:
Douglas M. Jennewein, Jack M. Gardiner, Bremen L. Braun, Lisa Harper, Valentin Antonescu, Carson M. Andorf, Scott M. Birkett, Alper Yilmaz, Carol Lushbough, Carolyn J. Lawrence, Taner Z. Sen, John Quackenbush, Sateesh Kumar Kodavali, Mary L. Schaeffer, Darwin A. Campbell, Erich Grotewold, Damon Lisch, Donald R. McCarty, Corina Antonescu, Karen E. Koch, Ethalinda K. S. Cannon, Destri Andorf
Publikováno v:
International Journal of Plant Genomics
The purpose of the online resource presented here, POPcorn (Project Portal for corn), is to enhance accessibility of maize genetic and genomic resources for plant biologists. Currently, many online locations are difficult to find, some are best searc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1373864f7bb0959b2b91b9115b61124f
https://doi.org/10.1155/2011/923035
https://doi.org/10.1155/2011/923035
Publikováno v:
Current Protocols in Bioinformatics
The DFCI Gene Index Web pages provide access to analyses of ESTs and gene sequences for nearly 114 species, as well as a number of resources derived from these. Each species-specific database is presented using a common format with a home page. A var
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3a1948259632e7a6509173c4d9d0fbdd
https://pubmed.ncbi.nlm.nih.gov/20205187
https://pubmed.ncbi.nlm.nih.gov/20205187
Autor:
Agnes P. Chan, Geo Pertea, Foo Cheung, Valentin Antonescu, Razvan Sultana, Yuandan Lee, Svetlana Karamycheva, Sirisha Sunkara, Jennifer Tsai, John Quackenbush
Publikováno v:
Nucleic Acids Research
Although the list of completed genome sequencing projects has expanded rapidly, sequencing and analysis of expressed sequence tags (ESTs) remain a primary tool for discovery of novel genes in many eukaryotes and a key element in genome annotation. Th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e0e207087e68b8d8b74e3dbdd488120
https://pubmed.ncbi.nlm.nih.gov/15608288
https://pubmed.ncbi.nlm.nih.gov/15608288
Autor:
Yuandan Lee, Valentin Antonescu, Joseph White, John Quackenbush, Svetlana Karamycheva, Jennifer Tsai, Feng Liang, Jennifer Cho, Razvan Sultana, Foo Cheung, Ingeborg Holt, Geo Pertea, Babak Parvizi
Comparative genomics promises to rapidly accelerate the identification and functional classification of biologically important human genes. We developed the TIGR Orthologous Gene Alignment (TOGA; 〈http://www.tigr.org/tdb/toga/toga.shtml〉) databas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15e72e271aa24dc6e75420539b2e2415
https://europepmc.org/articles/PMC155294/
https://europepmc.org/articles/PMC155294/
Autor:
Geo Pertea, Razvan Sultana, Xiaoqiu Huang, Babak Parvizi, Feng Liang, Foo Cheung, Yuandan Lee, Jennifer Tsai, Joseph White, Valentin Antonescu, Svetlana Karamycheva, John Quackenbush
Publikováno v:
Bioinformatics. 19:651-652
TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1d16182d0dbd0fa6ca5c7878ea3536b
https://doi.org/10.1093/bioinformatics/btg034
https://doi.org/10.1093/bioinformatics/btg034