Zobrazeno 1 - 10
of 336
pro vyhledávání: '"VANDERVALK, P"'
Here we describe the SHARE system, a web service based framework for distributed querying and reasoning on the semantic web. The main innovations of SHARE are: (1) the extension of a SPARQL query engine to perform on-demand data retrieval from web se
Externí odkaz:
http://arxiv.org/abs/1305.4455
SPARQL query composition is difficult for the lay-person or even the experienced bioinformatician in cases where the data model is unfamiliar. Established best-practices and internationalization concerns dictate that semantic web ontologies should us
Externí odkaz:
http://arxiv.org/abs/1012.1666
Autor:
Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)
Abstract Background Genome sequencing yields the sequence of many short snippets of DNA (reads) from a genome. Genome assembly attempts to reconstruct the original genome from which these reads were derived. This task is difficult due to gaps and err
Externí odkaz:
https://doaj.org/article/dccb9dd54a6741eab57266cecd973b35
Autor:
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanc Birol, René L. Warren
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)
Abstract Background The long-range sequencing information captured by linked reads, such as those available from 10× Genomics (10xG), helps resolve genome sequence repeats, and yields accurate and contiguous draft genome assemblies. We introduce ARK
Externí odkaz:
https://doaj.org/article/197885370f9b4e5095cac23ac5496b4f
Autor:
Koehorst-ter Huurne K, Groothuis-Oudshoorn CGM, vanderValk PDLPM, Movig KLL, van der Palen J, Brusse-Keizer M
Publikováno v:
International Journal of COPD, Vol Volume 13, Pp 1683-1690 (2018)
Kirsten Koehorst-ter Huurne,1 Catharina GM Groothuis-Oudshoorn,2 Paul DLPM vanderValk,1 Kris LL Movig,3 Job van der Palen,4,5 Marjolein Brusse-Keizer4 1Department of Pulmonary Medicine, Medisch Spectrum Twente, Enschede, the Netherlands; 2Department
Externí odkaz:
https://doaj.org/article/97947a7a243643709eacb703df192c8b
Autor:
S. Austin Hammond, René L. Warren, Benjamin P. Vandervalk, Erdi Kucuk, Hamza Khan, Ewan A. Gibb, Pawan Pandoh, Heather Kirk, Yongjun Zhao, Martin Jones, Andrew J. Mungall, Robin Coope, Stephen Pleasance, Richard A. Moore, Robert A. Holt, Jessica M. Round, Sara Ohora, Branden V. Walle, Nik Veldhoen, Caren C. Helbing, Inanc Birol
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-8 (2017)
The globally-distributed Ranidae (true frogs) are the largest frog family. Here, Hammond et al. present a draft genome of the North American bullfrog, Rana (Lithobates) catesbeiana, as a foundation for future understanding of true frog genetics as am
Externí odkaz:
https://doaj.org/article/73c0094c059c4ab19b4b752f09458fa7
Autor:
Brusse-Keizer M, VanderValk P, van der Zanden RW, Nijdam L, van der Palen J, Hendrix R, Movig K
Publikováno v:
International Journal of COPD, Vol 2015, Iss Issue 1, Pp 455-461 (2015)
Marjolein Brusse-Keizer,1 Paul VanderValk,2 Rogier W van der Zanden,3 Lars Nijdam,4 Job van der Palen,1,5 Ron Hendrix,6,7 Kris Movig4 1Medical School Twente, 2Department of Pulmonary Medicine, Medisch Spectrum Twente, Enschede, 3Department of Clinica
Externí odkaz:
https://doaj.org/article/9cb2a859a2a04a038726e97dc1934f12
Akademický článek
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Autor:
Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk, Richard A Moore, Stephen Pleasance, Robin J Coope, Joerg Bohlmann, Robert A Holt, Steven J M Jones, Inanc Birol
Publikováno v:
PLoS ONE, Vol 11, Iss 9, p e0163059 (2016)
The linked read sequencing library preparation platform by 10X Genomics produces barcoded sequencing libraries, which are subsequently sequenced using the Illumina short read sequencing technology. In this new approach, long fragments of DNA are part
Externí odkaz:
https://doaj.org/article/107d908370d04fc18e8c9470aed74cba
Autor:
Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren
Publikováno v:
International Journal of Genomics, Vol 2015 (2015)
De novo assembly of the genome of a species is essential in the absence of a reference genome sequence. Many scalable assembly algorithms use the de Bruijn graph (DBG) paradigm to reconstruct genomes, where a table of subsequences of a certain length
Externí odkaz:
https://doaj.org/article/074da3bfe45a457d9a147da215297915