GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies.

Autor: Větrovský T; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Kolaříková Z; Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia., Lepinay C; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Awokunle Hollá S; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Davison J; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi St 2, 504 09, Tartu, Estonia., Fleyberková A; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Gromyko A; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Jelínková B; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Kolařík M; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Krüger M; Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia., Lejsková R; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Michalčíková L; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Michalová T; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Moora M; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi St 2, 504 09, Tartu, Estonia., Moravcová A; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia.; Faculty of Science, Charles University, Albertov 6, 128 43, Prague, Czechia., Moulíková Š; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Odriozola I; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Öpik M; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi St 2, 504 09, Tartu, Estonia., Pappová M; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Piché-Choquette S; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Skřivánek J; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia.; Faculty of Science, Charles University, Albertov 6, 128 43, Prague, Czechia., Vlk L; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Zobel M; Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi St 2, 504 09, Tartu, Estonia., Baldrian P; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia., Kohout P; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia.; Faculty of Science, Charles University, Albertov 6, 128 43, Prague, Czechia.

Publikováno v: The New phytologist [New Phytol] 2023 Dec; Vol. 240 (5), pp. 2151-2163. Date of Electronic Publication: 2023 Oct 02.

Exploring structural and molecular diversity of Ericaceae hair root mycobionts: a comparison between Northern Bohemia and Argentine Patagonia.

Autor: Vohník M; Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Průhonice, Czechia. vohnik@ibot.cas.cz., Bruzone MC; Laboratorio de Microbiología Aplicada y Biotecnología, Centro Regional Universitario Bariloche, IPATEC (Universidad Nacional del Comahue-CONICET), San Carlos de Bariloche, Río Negro, Argentina., Knoblochová T; Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Průhonice, Czechia., Fernández NV; Laboratorio de Microbiología Aplicada y Biotecnología, Centro Regional Universitario Bariloche, IPATEC (Universidad Nacional del Comahue-CONICET), San Carlos de Bariloche, Río Negro, Argentina.; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina., Kolaříková Z; Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Průhonice, Czechia., Větrovský T; Laboratory of Environmental Microbiology, Institute of Microbiology, Czech Academy of Sciences, Prague, Czechia., Fontenla SB; Laboratorio de Microbiología Aplicada y Biotecnología, Centro Regional Universitario Bariloche, IPATEC (Universidad Nacional del Comahue-CONICET), San Carlos de Bariloche, Río Negro, Argentina.

Publikováno v: Mycorrhiza [Mycorrhiza] 2023 Nov; Vol. 33 (5-6), pp. 425-447. Date of Electronic Publication: 2023 Oct 04.

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.

Autor: Hakimzadeh A; Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Abdala Asbun A; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, Netherlands., Albanese D; Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, Italy., Bernard M; INRAE, AgroParisTech, GABI, Université Paris-Saclay, Jouy-en-Josas, France.; INRAE, SIGENAE, Jouy-en-Josas, France., Buchner D; Aquatic Ecosystem Research, University of Duisburg-Essen, Essen, Germany., Callahan B; Department of Population Health and Pathobiology, College of Veterinary Medicine and Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, USA., Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA., Curd E; Vermont Biomedical Research Network, University of Vermont, Burlington, Vermont, USA., Djemiel C; Agroécologie, INRAE, Institut Agro, Univ. Bourgogne Franche-Comté, Dijon, France., Brandström Durling M; Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden., Elbrecht V; Aquatic Ecosystem Research, University of Duisburg-Essen, Essen, Germany., Gold Z; Zachary Gold, NOAA Pacific Marine Environmental Laboratory, Seattle, Washington, USA., Gweon HS; UK Centre for Ecology & Hydrology, Oxfordshire, UK.; School of Biological Sciences, University of Reading, Reading, UK., Hajibabaei M; Department of Integrative Biology and Centre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada., Hildebrand F; Gut Microbes & Health, Quadram Institute Bioscience, Norfolk, UK.; Earlham Institute, Norwich Research Park, Norfolk, UK., Mikryukov V; Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Normandeau E; Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, Québec, Canada., Özkurt E; Gut Microbes & Health, Quadram Institute Bioscience, Norfolk, UK.; Earlham Institute, Norwich Research Park, Norfolk, UK., M Palmer J; Center for Forest Mycology Research, Northern Research Station, US Forest Service, Madison, Wisconsin, USA., Pascal G; GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France., Porter TM; Department of Integrative Biology and Centre for Biodiversity Genomics, University of Guelph, Guelph, Ontario, Canada., Straub D; Quantitative Biology Center (QBiC), University of Tübingen, Tübingen, Germany., Vasar M; Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Větrovský T; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Praha, Czech Republic., Zafeiropoulos H; KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Molecular Bacteriology, Leuven, Belgium., Anslan S; Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.; Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.

Publikováno v: Molecular ecology resources [Mol Ecol Resour] 2024 Jul; Vol. 24 (5), pp. e13847. Date of Electronic Publication: 2023 Aug 07.

Decomposition of Fomes fomentatius fruiting bodies - transition of healthy living fungus into a decayed bacteria-rich habitat is primarily driven by Arthropoda.

Autor: Bosch J; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia., Dobbler PT; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia., Větrovský T; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia., Tláskal V; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia., Baldrian P; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia., Brabcová V; Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, 142 00 Prague, Czechia.

Publikováno v: FEMS microbiology ecology [FEMS Microbiol Ecol] 2024 Apr 10; Vol. 100 (5).

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