Epigenetic Pyrimidine Nucleotides in Competition with Natural dNTPs as Substrates for Diverse DNA Polymerases.

Autor: Pospíšil Š; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16000 Prague 6, Czech Republic.; Department of Organic Chemistry, Faculty of Science, Charles University, Hlavova 8, CZ-12843 Prague 2, Czech Republic., Panattoni A; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16000 Prague 6, Czech Republic., Gracias F; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16000 Prague 6, Czech Republic., Sýkorová V; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16000 Prague 6, Czech Republic., Hausnerová VV; Lab. of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic., Vítovská D; Lab. of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic., Šanderová H; Lab. of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic., Krásný L; Lab. of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic., Hocek M; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16000 Prague 6, Czech Republic.; Department of Organic Chemistry, Faculty of Science, Charles University, Hlavova 8, CZ-12843 Prague 2, Czech Republic.

Publikováno v: ACS chemical biology [ACS Chem Biol] 2022 Oct 21; Vol. 17 (10), pp. 2781-2788. Date of Electronic Publication: 2022 Jun 09.

Novel lipophosphonoxin-loaded polycaprolactone electrospun nanofiber dressing reduces Staphylococcus aureus induced wound infection in mice.

Autor: Do Pham DD; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic., Jenčová V; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Kaňuchová M; Laboratory of Cell Interactions, Center of Clinical and Preclinical Research MediPark, Pavol Jozef Šafárik University, Trieda SNP 1, 040 11, Košice, Slovak Republic., Bayram J; Prague Burn Centre, Third Faculty of Medicine, University Hospital Královské Vinohrady, Šrobárova 50, 100 34, Prague 10, Czech Republic., Grossová I; Prague Burn Centre, Third Faculty of Medicine, University Hospital Královské Vinohrady, Šrobárova 50, 100 34, Prague 10, Czech Republic., Šuca H; Prague Burn Centre, Third Faculty of Medicine, University Hospital Královské Vinohrady, Šrobárova 50, 100 34, Prague 10, Czech Republic., Urban L; Laboratory of Cell Interactions, Center of Clinical and Preclinical Research MediPark, Pavol Jozef Šafárik University, Trieda SNP 1, 040 11, Košice, Slovak Republic.; Department of Biomedical Research, East-Slovak Institute of Cardiovascular Diseases, Ondavská 8, 040 11, Košice, Slovak Republic., Havlíčková K; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Novotný V; The Institute for Nanomaterials, Advanced Technologies and Innovation, Bendlova 1409/7, 460 01, Liberec 1, Czech Republic., Mikeš P; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Mojr V; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic., Asatiani N; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Košťáková EK; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Maixnerová M; Laboratory of Bacterial Genetics, Centre for Epidemiology and Microbiology, National Institute of Public Health, Šrobárova 49/48, 100 00, Prague 10, Czech Republic., Vlková A; Unit for Biomedicine and Welfare of Laboratory Animals, National Institute of Public Health, Šrobárova 49/48, 100 00, Prague 10, Czech Republic., Vítovská D; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences V.V.I., Vídeňská 1083, 142 20, Prague 4, Czech Republic., Šanderová H; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences V.V.I., Vídeňská 1083, 142 20, Prague 4, Czech Republic., Nemec A; Laboratory of Bacterial Genetics, Centre for Epidemiology and Microbiology, National Institute of Public Health, Šrobárova 49/48, 100 00, Prague 10, Czech Republic.; Department of Medical Microbiology, Second Faculty of Medicine, Charles University, V Úvalu 84, 150 06, Prague 5, Czech Republic., Krásný L; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology, Czech Academy of Sciences V.V.I., Vídeňská 1083, 142 20, Prague 4, Czech Republic., Zajíček R; Prague Burn Centre, Third Faculty of Medicine, University Hospital Královské Vinohrady, Šrobárova 50, 100 34, Prague 10, Czech Republic., Lukáš D; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentska 1402/2, 461 17, Liberec 1, Czech Republic., Rejman D; Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 166 10, Prague 6, Czech Republic. rejman@uochb.cas.cz., Gál P; Laboratory of Cell Interactions, Center of Clinical and Preclinical Research MediPark, Pavol Jozef Šafárik University, Trieda SNP 1, 040 11, Košice, Slovak Republic. pgal@vusch.sk.; Prague Burn Centre, Third Faculty of Medicine, University Hospital Královské Vinohrady, Šrobárova 50, 100 34, Prague 10, Czech Republic. pgal@vusch.sk.; Department of Biomedical Research, East-Slovak Institute of Cardiovascular Diseases, Ondavská 8, 040 11, Košice, Slovak Republic. pgal@vusch.sk.

Publikováno v: Scientific reports [Sci Rep] 2021 Sep 03; Vol. 11 (1), pp. 17688. Date of Electronic Publication: 2021 Sep 03.

Bacterial nanotubes as a manifestation of cell death.

Autor: Pospíšil J; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Vítovská D; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Kofroňová O; Laboratory of Molecular Structure Characterization, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Muchová K; Department of Microbial Genetics, Institute of Molecular Biology, Slovak Academy of Sciences, 845 51, Bratislava, Slovakia., Šanderová H; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Hubálek M; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, 160 00, Prague 6, Czech Republic., Šiková M; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Modrák M; Laboratory of Bioinformatics/Core Facility, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic., Benada O; Laboratory of Molecular Structure Characterization, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic. benada@biomed.cas.cz., Barák I; Department of Microbial Genetics, Institute of Molecular Biology, Slovak Academy of Sciences, 845 51, Bratislava, Slovakia. imrich.barak@savba.sk., Krásný L; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, 142 20, Prague 4, Czech Republic. krasny@biomed.cas.cz.

Publikováno v: Nature communications [Nat Commun] 2020 Oct 02; Vol. 11 (1), pp. 4963. Date of Electronic Publication: 2020 Oct 02.

Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase.

Autor: Kubáň V, Srb P; Institute of Organic Chemistry and Biochemistry , Czech Academy of Sciences , v.v.i., Flemingovo nám 2 , Prague 6 16610 , Czech Republic., Štégnerová H, Padrta P, Zachrdla M, Jaseňáková Z, Šanderová H; Laboratory of Microbial Genetics and Gene Expression , Institute of Microbiology of the Czech Academy of Sciences , v.v.i., Vídenská 1083 , Prague 4 14220 , Czech Republic., Vítovská D; Laboratory of Microbial Genetics and Gene Expression , Institute of Microbiology of the Czech Academy of Sciences , v.v.i., Vídenská 1083 , Prague 4 14220 , Czech Republic., Krásný L; Laboratory of Microbial Genetics and Gene Expression , Institute of Microbiology of the Czech Academy of Sciences , v.v.i., Vídenská 1083 , Prague 4 14220 , Czech Republic., Koval' T; Laboratory of Structure and Function of Biomolecules , Institute of Biotechnology of the Czech Academy of Sciences , v.v.i., Biocev, Prumyslová 595 , Vestec 25250 , Czech Republic., Dohnálek J; Laboratory of Structure and Function of Biomolecules , Institute of Biotechnology of the Czech Academy of Sciences , v.v.i., Biocev, Prumyslová 595 , Vestec 25250 , Czech Republic., Ziemska-Legiecka J; Institute of Biochemistry and Biophysics PAS , Pawinskiego 5A , Warsaw 02-106 , Poland., Grynberg M; Institute of Biochemistry and Biophysics PAS , Pawinskiego 5A , Warsaw 02-106 , Poland., Jarnot P; Institute of Informatics , Silesian University of Technology , Akademicka 16 , Gliwice 44-100 , Poland., Gruca A; Institute of Informatics , Silesian University of Technology , Akademicka 16 , Gliwice 44-100 , Poland., Jensen MR; Institut de Biologie Structurale , Université Grenoble Alpes-CEA-CNRS , 71 avenue des Martyrs , Grenoble 38044 , France., Blackledge M; Institut de Biologie Structurale , Université Grenoble Alpes-CEA-CNRS , 71 avenue des Martyrs , Grenoble 38044 , France., Žídek L

Publikováno v: Journal of the American Chemical Society [J Am Chem Soc] 2019 Oct 23; Vol. 141 (42), pp. 16817-16828. Date of Electronic Publication: 2019 Oct 10.

σ ^I from Bacillus subtilis: Impact on Gene Expression and Characterization of σ ^I -Dependent Transcription That Requires New Types of Promoters with Extended -35 and -10 Elements.

Autor: Ramaniuk O; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic.; Department of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic., Převorovský M; Department of Cell Biology, Faculty of Science, Charles University, Prague, Czech Republic., Pospíšil J; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Vítovská D; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Kofroňová O; Laboratory of Molecular Structure Characterization, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Benada O; Laboratory of Molecular Structure Characterization, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Schwarz M; Laboratory of Bioinformatics, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Šanderová H; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Hnilicová J; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic., Krásný L; Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic krasny@biomed.cas.cz.

Publikováno v: Journal of bacteriology [J Bacteriol] 2018 Aug 10; Vol. 200 (17). Date of Electronic Publication: 2018 Aug 10 (Print Publication: 2018).