TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects.

Autor: Masinas MPD; The Donnelly Centre, University of Toronto, Ontario, M5S 3E1, Canada., Usaj MM; The Donnelly Centre, University of Toronto, Ontario, M5S 3E1, Canada m.mattiazziusaj@utoronto.ca charlie.boone@utoronto.ca brenda.andrews@utoronto.ca., Usaj M; The Donnelly Centre, University of Toronto, Ontario, M5S 3E1, Canada., Boone C; The Donnelly Centre, University of Toronto, Ontario, M5S 3E1, Canada m.mattiazziusaj@utoronto.ca charlie.boone@utoronto.ca brenda.andrews@utoronto.ca.; Department of Molecular Genetics, University of Toronto, Ontario, M5S 3E1, Canada., Andrews BJ; The Donnelly Centre, University of Toronto, Ontario, M5S 3E1, Canada m.mattiazziusaj@utoronto.ca charlie.boone@utoronto.ca brenda.andrews@utoronto.ca.; Department of Molecular Genetics, University of Toronto, Ontario, M5S 3E1, Canada.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2020 Nov 05; Vol. 10 (11), pp. 3969-3976. Date of Electronic Publication: 2020 Nov 05.

Analysis and prediction of interactions between transmembrane and non-transmembrane proteins.

Autor: Lu, Chang¹ (AUTHOR), Jiang, Jiuhong¹ (AUTHOR), Chen, Qiufen¹ (AUTHOR), Liu, Huanhuan¹ (AUTHOR), Ju, Xingda¹ (AUTHOR) juxd513@nenu.edu.cn, Wang, Han¹ (AUTHOR) wangh101@nenu.edu.cn

Publikováno v: BMC Genomics. 4/24/2024, Vol. 25 Issue 1, p1-18. 18p.

A global genetic interaction network maps a wiring diagram of cellular function.

Autor: Costanzo M; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., VanderSluis B; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. Simons Center for Data Analysis, Simons Foundation, 160 Fifth Avenue, New York, NY 10010, USA., Koch EN; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Baryshnikova A; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Pons C; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Tan G; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Wang W; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Usaj M; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Hanchard J; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Lee SD; Department of Developmental, Molecular and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA., Pelechano V; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany., Styles EB; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Billmann M; Division of Signaling and Functional Genomics, German Cancer Research Center (DKFZ) and Heidelberg University, Heidelberg, Germany., van Leeuwen J; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., van Dyk N; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Lin ZY; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto ON, Canada., Kuzmin E; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Nelson J; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. Program in Biomedical Informatics and Computational Biology, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Piotrowski JS; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Chemical Genomics Research Group, RIKEN Center for Sustainable Resource Sciences (CSRS), Saitama, Japan., Srikumar T; Princess Margaret Cancer Centre, University Health Network and Department of Medical Biophysics, University of Toronto, Toronto ON, Canada., Bahr S; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Chen Y; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Deshpande R; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Kurat CF; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Li SC; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Chemical Genomics Research Group, RIKEN Center for Sustainable Resource Sciences (CSRS), Saitama, Japan., Li Z; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Usaj MM; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Okada H; Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan 277-8561., Pascoe N; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., San Luis BJ; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Sharifpoor S; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Shuteriqi E; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Simpkins SW; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. Program in Biomedical Informatics and Computational Biology, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA., Snider J; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Suresh HG; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Tan Y; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Zhu H; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Malod-Dognin N; Computer Science Deptartment, University College London, London WC1E 6BT, UK., Janjic V; Department of Computing, Imperial College London, UK., Przulj N; Computer Science Deptartment, University College London, London WC1E 6BT, UK. School of Computing (RAF), Union University, Belgrade, Serbia., Troyanskaya OG; Simons Center for Data Analysis, Simons Foundation, 160 Fifth Avenue, New York, NY 10010, USA. Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Stagljar I; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Biochemistry, University of Toronto, Toronto, ON, Canada., Xia T; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. School of Electronic Information and Communications, Huazhong University of Science and Technology, Wuhan, China, 430074., Ohya Y; Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan 277-8561., Gingras AC; Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto ON, Canada., Raught B; Princess Margaret Cancer Centre, University Health Network and Department of Medical Biophysics, University of Toronto, Toronto ON, Canada., Boutros M; Division of Signaling and Functional Genomics, German Cancer Research Center (DKFZ) and Heidelberg University, Heidelberg, Germany., Steinmetz LM; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany. Department of Genetics, School of Medicine and Stanford Genome Technology Center Stanford University, Palo Alto, CA 94304, USA., Moore CL; Department of Developmental, Molecular and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA., Rosebrock AP; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Caudy AA; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1., Myers CL; Department of Computer Science and Engineering, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. Program in Biomedical Informatics and Computational Biology, University of Minnesota-Twin Cities, 200 Union Street, Minneapolis, MN 55455, USA. cmyers@cs.umn.edu brenda.andrews@utoronto.ca charlie.boone@utoronto.ca., Andrews B; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. cmyers@cs.umn.edu brenda.andrews@utoronto.ca charlie.boone@utoronto.ca., Boone C; The Donnelly Centre, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Department of Molecular Genetics, University of Toronto, 160 College Street, Toronto ON, Canada M5S 3E1. Chemical Genomics Research Group, RIKEN Center for Sustainable Resource Sciences (CSRS), Saitama, Japan. cmyers@cs.umn.edu brenda.andrews@utoronto.ca charlie.boone@utoronto.ca.

Publikováno v: Science (New York, N.Y.) [Science] 2016 Sep 23; Vol. 353 (6306).

The Brain Image Library: A Community-Contributed Microscopy Resource for Neuroscientists.

Autor: Kenney, Mariah, Vasylieva, Iaroslavna, Hood, Greg, Cao-Berg, Ivan, Tuite, Luke, Laghaei, Rozita, Smith, Megan C., Watson, Alan M., Ropelewski, Alexander J.

Publikováno v: Scientific Data; 11/11/2024, Vol. 11 Issue 1, p1-11, 11p

Assignment of unimodal probability distribution models for quantitative morphological phenotyping.

Autor: Ghanegolmohammadi, Farzan^1,2 (AUTHOR), Ohnuki, Shinsuke¹ (AUTHOR), Ohya, Yoshikazu^1,3 (AUTHOR) ohya@edu.k.u-tokyo.ac.jp

Publikováno v: BMC Biology. 4/1/2022, Vol. 20 Issue 1, p1-13. 13p.