Zobrazeno 1 - 10
of 55
pro vyhledávání: '"Ulrika Liljedahl"'
Autor:
Mariya Lysenkova Wiklander, Elin Övernäs, Johanna Lagensjö, Amanda Raine, Anna Petri, Ann-Christin Wiman, Jon Ramsell, Yanara Marincevic-Zuniga, Henrik Gezelius, Tom Martin, Ignas Bunikis, Sara Ekberg, Rikard Erlandsson, Pontus Larsson, Mai-Britt Mosbech, Susana Häggqvist, Susanne Hellstedt Kerje, Lars Feuk, Adam Ameur, Ulrika Liljedahl, Jessica Nordlund
Publikováno v:
BMC Research Notes, Vol 16, Iss 1, Pp 1-5 (2023)
Abstract Objectives The aim of this data paper is to describe a collection of 33 genomic, transcriptomic and epigenomic sequencing datasets of the B-cell acute lymphoblastic leukemia (ALL) cell line REH. REH is one of the most frequently used cell li
Externí odkaz:
https://doaj.org/article/5165637138d0472e9926245c93331949
Autor:
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W. Langhorst, V. K. Chaithanya Ponnaluri, Louise Williams, Karthik Ramaswamy Padmanabhan, Raymond Cavalcante, Anders Lundmark, Daniel Butler, Christopher Mozsary, Justin Gurvitch, John M. Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł P. Łabaj, Matthew A. Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B. Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, Christopher E. Mason
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-30 (2021)
Abstract Background Cytosine modifications in DNA such as 5-methylcytosine (5mC) underlie a broad range of developmental processes, maintain cellular lineage specification, and can define or stratify types of cancer and other diseases. However, the w
Externí odkaz:
https://doaj.org/article/8a322eba1d2e4d2ca87ac4166dc473a4
Autor:
Yongmei Zhao, Li Tai Fang, Tsai-wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen, Jyoti Shetty, Yuliya Kriga, Bao Tran, Bin Zhu, Zhong Chen, Wanqiu Chen, Charles Wang, Erich Jaeger, Daoud Meerzaman, Charles Lu, Kenneth Idler, Luyao Ren, Yuanting Zheng, Leming Shi, Virginie Petitjean, Marc Sultan, Tiffany Hung, Eric Peters, Jiri Drabek, Petr Vojta, Roberta Maestro, Daniela Gasparotto, Sulev Kõks, Ene Reimann, Andreas Scherer, Jessica Nordlund, Ulrika Liljedahl, Jonathan Foox, Christopher E. Mason, Chunlin Xiao, Huixiao Hong, Wenming Xiao
Publikováno v:
Scientific Data, Vol 8, Iss 1, Pp 1-14 (2021)
Measurement(s) Somatic Mutation Analysis Technology Type(s) whole genome sequencing • Whole Exome Sequencing Factor Type(s) sequencing platform • sample prepration • library preparation • bioinformatics method Sample Characteristic - Organism
Externí odkaz:
https://doaj.org/article/df99660883fb470bb2307f5ae2b58917
Autor:
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W. Langhorst, V. K. Chaithanya Ponnaluri, Louise Williams, Karthik Ramaswamy Padmanabhan, Raymond Cavalcante, Anders Lundmark, Daniel Butler, Christopher Mozsary, Justin Gurvitch, John M. Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł P. Łabaj, Matthew A. Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B. Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, Christopher E. Mason
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-2 (2021)
Externí odkaz:
https://doaj.org/article/10f42b1e364944e7840858cc9d08d7ba
Publikováno v:
PLoS ONE, Vol 13, Iss 4, p e0195972 (2018)
The powerful HiSeq X sequencers with their patterned flowcell technology and fast turnaround times are instrumental for many large-scale genomic and epigenomic studies. However, assessment of DNA methylation by sodium bisulfite treatment results in s
Externí odkaz:
https://doaj.org/article/9f049853e69f4345b1a46b898e374278
Autor:
Lionel Guy, Cecilia Jernberg, Jenny Arvén Norling, Sofie Ivarsson, Ingela Hedenström, Öjar Melefors, Ulrika Liljedahl, Lars Engstrand, Siv G E Andersson
Publikováno v:
PLoS ONE, Vol 8, Iss 5, p e63027 (2013)
The sequencing of highly virulent Escherichia coli O104:H4 strains isolated during the outbreak of bloody diarrhea and hemolytic uremic syndrome in Europe in 2011 revealed a genome that contained a Shiga toxin encoding prophage and a plasmid encoding
Externí odkaz:
https://doaj.org/article/37020ca42b174ddbac15b60f2fec2308
Autor:
Jonas Carlsson Almlöf, Per Lundmark, Anders Lundmark, Bing Ge, Seraya Maouche, Harald H H Göring, Ulrika Liljedahl, Camilla Enström, Jessy Brocheton, Carole Proust, Tiphaine Godefroy, Jennifer G Sambrook, Jennifer Jolley, Abigail Crisp-Hihn, Nicola Foad, Heather Lloyd-Jones, Jonathan Stephens, Rhian Gwilliam, Catherine M Rice, Christian Hengstenberg, Nilesh J Samani, Jeanette Erdmann, Heribert Schunkert, Tomi Pastinen, Panos Deloukas, Alison H Goodall, Willem H Ouwehand, François Cambien, Ann-Christine Syvänen
Publikováno v:
PLoS ONE, Vol 7, Iss 12, p e52260 (2012)
A large number of genome-wide association studies have been performed during the past five years to identify associations between SNPs and human complex diseases and traits. The assignment of a functional role for the identified disease-associated SN
Externí odkaz:
https://doaj.org/article/d0a286581c23430fa9c2b3d1ada6f11f
Autor:
Kenneth Idler, Andreas Scherer, Charles Lu, Timothy K. McDaniel, Penelope Duerken-Hughes, K J. Langenbach, Seta Stanbouly, Charles Wang, Victoria Zismann, Keyur Talsania, Leming Shi, Margaret C. Cam, Shamoni Maheshwari, Zhipan Li, Luyao Ren, Petr Vojta, Mehdi Pirooznia, Jonathan J Keats, Rasika Kalamegham, Howard Jacob, Bao Tran, Liz Kerrigan, Baitang Ning, Ene Reimann, Jiri Drabek, Eric F. Donaldson, Zhaowei Yang, Sayed Mohammad Ebrahim Sahraeian, Daoud Meerzaman, Marc Sultan, Jessica Nordlund, Tsai-wei Shen, Sulev Kõks, Christopher E. Mason, Yunfei Guo, Winnie S. Liang, Claudia Catalanotti, Jeffrey M. Trent, Ying Yu, Roderick V. Jensen, Huixiao Hong, Malcolm Moos, Wenming Xiao, Stephen T. Sherry, Jonathan Foox, Joe Shuga, Hugo Y. K. Lam, Chunlin Xiao, Lijing Yao, Li Tai Fang, Wanqiu Chen, Marghoob Mohiyuddin, Monika Mehta, Rebecca Kusko, Roberta Maestro, Yongmei Zhao, Jonathan Adkins, Gary P. Schroth, Daniel Butler, Yuliya Kriga, Ogan D Abaan, Erich Jaeger, Yuanting Zheng, Daniela Gasparotto, Ulrika Liljedahl, Tiffany Hung, Eric Peters, Erica Tassone, Maryellen de Mars, Cu Nguyen, Lei Song, Bin Zhu, Weida Tong, Zivana Tezak, Justin B. Lack, Virginie Petitjean, Jyoti Shetty, Jing Li, Zhong Chen
Publikováno v:
Nat Biotechnol
The lack of samples for generating standardized DNA datasets for setting up a sequencing pipeline or benchmarking the performance of different algorithms limits the implementation and uptake of cancer genomics. Here, we describe reference call sets o
Autor:
Maryellen de Mars, Cu Nguyen, Tiffany Hung, Eric Peters, Charles Lu, Meijian Guan, Bao Tran, Maurizio Polano, Bin Zhu, Samir Lababidi, Wendell D. Jones, Chunlin Xiao, Andreas Scherer, K J. Langenbach, Zhipan Li, Luyao Ren, Weida Tong, Erich Jaeger, Rebecca Kusko, Zivana Tezak, Ying Yu, Ulrika Liljedahl, Louis M. Staudt, Huixiao Hong, Jing Wang, Yuanting Zheng, Ali Moshrefi, Cristobal Juan Vera, Chris Miller, Rasika Kalamegham, Arati Raziuddin, Howard Jacob, Roberta Maestro, Bindu Swapna Madala, Petr Vojta, Jessica Nordlund, Li Tai Fang, Jiri Drabek, Xuelu Liu, Corey Miles, Gary P. Schroth, Fayaz Seifuddin, Tim R. Mercer, Chunhua Yan, Leihong Wu, Sulev Kõks, Roderick V. Jensen, Jennifer A Hipp, Yun-Ching Chen, Malcolm Moos, Yongmei Zhao, Baitang Ning, Aparna Natarajan, Brian N. Papas, Xin Chen, Ashley Walton, Stephen T. Sherry, Christopher E. Mason, Liz Kerrigan, Ogan D Abaan, Wanqiu Chen, Kenneth Idler, Jingya Wang, Tsai-wei Shen, James C. Willey, Ene Reimann, Justin B. Lack, Virginie Petitjean, Jyoti Shetty, Daoud Meerzaman, Charles Wang, Jian-Liang Li, Tiffany Truong, Keyur Talsania, Mehdi Pirooznia, Marc Sultan, Urvashi Mehra, Wenming Xiao, Zhong Chen, Ana Granat, Leming Shi, Margaret C. Cam, Qing-Rong Chen, Eric F. Donaldson, Wolfgang Resch, Ben Ernest, Yuliya Kriga, Gokhan Yavas, Thomas M. Blomquist, Parthav Jailwala
Publikováno v:
Nat Biotechnol
Clinical applications of precision oncology require accurate tests that can distinguish true cancer-specific mutations from errors introduced at each step of next-generation sequencing (NGS). To date, no bulk sequencing study has addressed the effect
Autor:
Enroth, Ulf Gyllensten, Julia Hedlund-Lindberg, Johanna Svensson, Johanna Manninen, Torbjörn Öst, Jon Ramsell, Matilda Åslin, Emma Ivansson, Marta Lomnytska, Maria Lycke, Tomas Axelsson, Ulrika Liljedahl, Jessica Nordlund, Per-Henrik Edqvist, Tobias Sjöblom, Mathias Uhlén, Karin Stålberg, Karin Sundfeldt, Mikael Åberg, Stefan
Publikováno v:
Cancers; Volume 14; Issue 7; Pages: 1757
Background: Ovarian cancer is the eighth most common cancer among women and has a 5-year survival of only 30–50%. The survival is close to 90% for patients in stage I but only 20% for patients in stage IV. The presently available biomarkers have in