Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Autor: Edwards RA; Department of Biology, San Diego State University, San Diego, CA, USA. redwards@sdsu.edu.; The Viral Information Institute, San Diego State University, San Diego, CA, USA. redwards@sdsu.edu., Vega AA; Department of Biology, San Diego State University, San Diego, CA, USA., Norman HM; Department of Biology, San Diego State University, San Diego, CA, USA., Ohaeri M; Department of Biology, San Diego State University, San Diego, CA, USA., Levi K; Department of Computer Science, San Diego State University, San Diego, CA, USA., Dinsdale EA; Department of Biology, San Diego State University, San Diego, CA, USA., Cinek O; Department of Pediatrics, 2nd Faculty of Medicine, Charles University in Prague, Prague, Czech Republic., Aziz RK; Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt., McNair K; Computational Sciences Research Center, San Diego State University, San Diego, CA, USA., Barr JJ; School of Biological Sciences, Monash University, Clayton, Victoria, Australia., Bibby K; Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, Notre Dame, IN, USA., Brouns SJJ; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands., Cazares A; Institute of Infection and Global Health, University of Liverpool, Liverpool, UK., de Jonge PA; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.; Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands., Desnues C; MEPHI, Aix-Marseille Université, IRD, AP-HM, CNRS, IHU Méditerranée Infection, Marseille, France.; Mediterranean Institute of Oceanography, Aix-Marseille Université, Université de Toulon, CNRS, IRD, UM 110, Marseille, France., Díaz Muñoz SL; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA.; Department of Microbiology and Molecular Genetics, University of California, Davis, Davis, CA, USA., Fineran PC; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand., Kurilshikov A; Department of Genetics, University Medical Center Groningen, Groningen, The Netherlands., Lavigne R; Department of Biosystems, KU Leuven, Leuven, Belgium., Mazankova K; Department of Pediatrics, 2nd Faculty of Medicine, Charles University in Prague, Prague, Czech Republic., McCarthy DT; EPHM Lab, Civil Engineering Department, Monash University, Clayton, Victoria, Australia., Nobrega FL; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands., Reyes Muñoz A; Max Planck Tandem Group in Computational Biology, Departamento de Ciencias Biológicas, Universidad de los Andes, Bogotá, Colombia., Tapia G; Department of Child Health, Norwegian Institute of Public Health, Oslo, Norway., Trefault N; GEMA Center for Genomics, Ecology & Environment, Universidad Mayor, Huechuraba, Chile., Tyakht AV; Laboratory of Bioinformatics, Federal Research and Clinical Center of Physical-Chemical Medicine, Moscow, Russia.; Department of Informational Technologies, ITMO University, Saint Petersburg, Russia., Vinuesa P; Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico., Wagemans J; Department of Biosystems, KU Leuven, Leuven, Belgium., Zhernakova A; Department of Genetics, University Medical Center Groningen, Groningen, The Netherlands., Aarestrup FM; National Food Institute, Research Group for Genomic Epidemiology, Technical University of Denmark, Kongens Lyngby, Denmark., Ahmadov G; Endocrine Centre Baku, Baku, Azerbaijan., Alassaf A; Department of Pediatrics, School of Medicine, University of Jordan, Amman, Jordan., Anton J; Department of Physiology, Genetics and Microbiology, University of Alicante, Alicante, Spain., Asangba A; Carl R. Woese Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Billings EK; Department of Biology, San Diego State University, San Diego, CA, USA., Cantu VA; Computational Sciences Research Center, San Diego State University, San Diego, CA, USA., Carlton JM; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA., Cazares D; Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico., Cho GS; Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Kiel, Germany., Condeff T; Department of Biology, San Diego State University, San Diego, CA, USA., Cortés P; Departament de Genètica i de Microbiologia, Universitat Autònoma De Barcelona, Barcelona, Spain., Cranfield M; Wildlife Health Center, University of California, Davis, Davis, CA, USA., Cuevas DA; Computational Sciences Research Center, San Diego State University, San Diego, CA, USA., De la Iglesia R; Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile., Decewicz P; Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland., Doane MP; Department of Biology, San Diego State University, San Diego, CA, USA., Dominy NJ; Department of Anthropology, Dartmouth College, Hanover, NH, USA., Dziewit L; Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland., Elwasila BM; Department of Pediatrics and Child Health, Faculty of Medicine, University of Khartoum, Khartoum, Sudan., Eren AM; Department of Medicine, University of Chicago, Chicago, IL, USA., Franz C; Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Kiel, Germany., Fu J; Department of Pediatrics, University Medical Center Groningen, Groningen, The Netherlands., Garcia-Aljaro C; Department of Genetics, Microbiology and Statistics, Universitat de Barcelona, Barcelona, Spain., Ghedin E; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA., Gulino KM; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA., Haggerty JM; Department of Biology, San Diego State University, San Diego, CA, USA., Head SR; Next Generation Sequencing and Microarray Core Facility, The Scripps Research Institute, La Jolla, CA, USA., Hendriksen RS; National Food Institute, Research Group for Genomic Epidemiology, Technical University of Denmark, Kongens Lyngby, Denmark., Hill C; School of Microbiology, University College Cork, Cork, Ireland., Hyöty H; Department of Virology, School of Medicine, University of Tampere, Tampere, Finland., Ilina EN; Department of Molecular Biology and Genetics, Federal Research and Clinical Center of Physical-Chemical Medicine, Moscow, Russia., Irwin MT; Department of Anthropology, Northern Illinois University, DeKalb, IL, USA., Jeffries TC; School of Science and Health, Western Sydney University, Penrith, New South Wales, Australia., Jofre J; Department of Genetics, Microbiology and Statistics, Universitat de Barcelona, Barcelona, Spain., Junge RE; Department of Animal Health, Columbus Zoo and Aquarium, Powell, OH, USA., Kelley ST; Department of Biology, San Diego State University, San Diego, CA, USA., Khan Mirzaei M; Department of Microbiology and Immunology, McGill University, Montreal, Quebec, Canada., Kowalewski M; Department Estacion Biologica Corrientes, Institution Museo Arg. Cs. Naturales-CONICET, Corrientes, Argentina., Kumaresan D; UWA School of Agriculture and Environment, University of Western Australia, Perth, Western Australia, Australia., Leigh SR; Department of Anthropology, University of Colorado, Boulder, CO, USA., Lipson D; Department of Biology, San Diego State University, San Diego, CA, USA., Lisitsyna ES; Department of Research and Development, Lytech Ltd., Moscow, Russia., Llagostera M; Departament de Genètica i de Microbiologia, Universitat Autònoma De Barcelona, Barcelona, Spain., Maritz JM; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA., Marr LC; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA., McCann A; APC Microbiome Institute, University College Cork, Cork, Ireland., Molshanski-Mor S; Clinical Microbiology & Immunology, Sackler school of Medicine, Tel Aviv University, Tel Aviv, Israel., Monteiro S; Laboratorio de Analises, Instituto Superior Tecnico, Universidade Lisboa, Lisboa, Portugal., Moreira-Grez B; UWA School of Agriculture and Environment, University of Western Australia, Perth, Western Australia, Australia., Morris M; Department of Biology, San Diego State University, San Diego, CA, USA., Mugisha L; CEHA, Kampala, Uganda.; COVAB, Makerere University, Kampala, Uganda., Muniesa M; Department of Genetics, Microbiology and Statistics, Universitat de Barcelona, Barcelona, Spain., Neve H; Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Kiel, Germany., Nguyen NP; Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA., Nigro OD; College of Natural and Computational Sciences, Hawai'i Pacific University, Kaneohe, HI, USA., Nilsson AS; Department of Molecular Biosciences, Stockholm University, Stockholm, Sweden., O'Connell T; Biological and Medical Informatics Program, San Diego State University, San Diego, CA, USA., Odeh R; Department of Pediatrics, School of Medicine, University of Jordan, Amman, Jordan., Oliver A; Department of Molecular Biology & Biochemistry, University of California, Irvine, Irvine, CA, USA., Piuri M; Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina., Prussin Ii AJ; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA., Qimron U; Department of Clinical Microbiology and Immunology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel., Quan ZX; Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Fudan University, Shanghai, China., Rainetova P; Centre of Epidemiology and Microbiology, National Institute of Public Health, Prague, Czech Republic., Ramírez-Rojas A; Molecular Genetics, Corporación Corpogen, Bogotá, Colombia., Raya R; CERELA, Tucumán, Argentina., Reasor K; Department of Biology, San Diego State University, San Diego, CA, USA., Rice GAO; Department of Anthropology, Dartmouth College, Hanover, NH, USA., Rossi A; Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands.; Department of Biology, University of Padova, Padova, Italy., Santos R; Laboratorio de Analises, Instituto Superior Tecnico, Universidade Lisboa, Lisboa, Portugal., Shimashita J; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA., Stachler EN; Swanson School of Engineering, University of Pittsburgh, Pittsburgh, PA, USA., Stene LC; Department of Child Health, Norwegian Institute of Public Health, Oslo, Norway., Strain R; APC Microbiome Institute, University College Cork, Cork, Ireland., Stumpf R; Carl R. Woese Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Torres PJ; Department of Biology, San Diego State University, San Diego, CA, USA., Twaddle A; Center for Genomics and Systems Biology & Department of Biology, New York University, New York, NY, USA., Ugochi Ibekwe M; Department of Pediatrics, Federal Teaching Hospital Abakaliki, Ebonyi State University, Abakaliki, Nigeria., Villagra N; Escuela de Tecnología Médica, Universidad Andres Bello, Santiago, Chile., Wandro S; Department of Molecular Biology & Biochemistry, University of California, Irvine, Irvine, CA, USA., White B; Carl R. Woese Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Whiteley A; UWA School of Agriculture and Environment, University of Western Australia, Perth, Western Australia, Australia., Whiteson KL; Department of Molecular Biology & Biochemistry, University of California, Irvine, Irvine, CA, USA., Wijmenga C; Department of Genetics, University Medical Center Groningen, Groningen, The Netherlands., Zambrano MM; Molecular Genetics, Corporación Corpogen, Bogotá, Colombia., Zschach H; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark., Dutilh BE; Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands. bedutilh@gmail.com.; Centre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Centre, Nijmegen, The Netherlands. bedutilh@gmail.com.

Publikováno v: Nature microbiology [Nat Microbiol] 2019 Oct; Vol. 4 (10), pp. 1727-1736. Date of Electronic Publication: 2019 Jul 08.