Výsledky vyhledávání - "Tyler Cassens"

Akademický článek

Identification of Omicron-Delta Coinfections Using PCR-Based Genotyping

Autor: Pavitra Roychoudhury, Shishi Luo, Kathleen Hayashibara, Pooneh Hajian, Margaret G. Mills, Jean Lozach, Tyler Cassens, Seffir T. Wendm, Isabel Arnould, David Becker, Tim Wesselman, Jeremy Davis-Turak, Richard Creager, Eric Lai, Keith R. Jerome, Tracy Basler, Andrew Dei Rossi, William Lee, Alexander L. Greninger

Publikováno v: Microbiology Spectrum, Vol 10, Iss 3 (2022)

Externí odkaz: https://doaj.org/article/2f8316e5234749d9ba2912cd68ccf0e7

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A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron

Publikováno v: Journal of Clinical Microbiology. 60

The rapid emergence of SARS-CoV-2 variants raised public health questions concerning the capability of diagnostic tests to detect new strains, the efficacy of vaccines, and how to map the geographical distribution of variants to understand transmissi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c0476184c86b8a13cb0c8e11640cbb7
https://doi.org/10.1128/jcm.00342-22

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Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

Publikováno v: Med (New York, N.Y.). 3(12)

Between November 2021 and February 2022, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Delta and Omicron variants co-circulated in the United States, allowing for co-infections and possible recombination events.We sequenced 29,719 posi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::450335a41d6295701fbfbd34b429659c
https://pubmed.ncbi.nlm.nih.gov/36332633

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A method for variant agnostic detection of SARS-CoV-2, rapid monitoring of circulating variants, detection of mutations of biological significance, and early detection of emergent variants such as Omicron

The rapid emergence of new SARS-CoV-2 variants raises a number of public health questions including the capability of diagnostic tests to detect new strains, the efficacy of vaccines, and how to map the geographical distribution of variants to better

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::92a290b9b5a5d0efd178dd5718070254
https://doi.org/10.1101/2022.01.08.22268865

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Evidence for SARS-CoV-2 Delta and Omicron Coinfections and Recombination

Publikováno v: SSRN Electronic Journal.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4c470f6446255afce14823bfdb70e0f2
https://doi.org/10.2139/ssrn.4095378

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SARS-CoV-2 variant Delta rapidly displaced variant Alpha in the United States and led to higher viral loads

This study reports on the displacement of Alpha (B.1.1.7) by Delta (B.1.617.2 and its substrains AY.1, AY.2, and AY.3) in the United States. By analyzing RT-qPCR testing results and viral sequencing results of samples collected across the United Stat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4742c193f5c8250568aac99fcc874a2e
https://doi.org/10.1101/2021.06.20.21259195

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Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

Autor: Rob Knight, David T.W. Wong, Peter De Hoff, Phillip G. Febbo, Kelly M. Schiabor Barrett, Jimmy M. Ramirez, Alexandre Bolze, Eric McDonald, Louise C. Laurent, Ezra Kurzban, David M. Becker, Michael Worobey, Emily Spencer, Marc Laurent, Duncan MacCannell, Kimberly Gietzen, Venice Servellita, Aaron Harding, Catelyn Anderson, Phoebe Seaver, Marc A. Suchard, Magnus Isaksson, Shashank Sathe, Brett Austin, Tracy Basler, Candace Wang, Holly Valentine, Simon R. White, Jason Nguyen, Sharoni Jacobs, Charles Y. Chiu, Laura D. Hughes, Mark Zeller, James T. Lu, Karthik Gangavarapu, Refugio Robles-Sikisaka, Kristian G. Andersen, Charlotte Rivera-Garcia, Kelly Hoon, Brad Sickler, Gene W. Yeo, Brendan B. Larsen, Nicole L. Washington, Eileen de Feo, Xueqing Wang, Jingtao Liu, Efren Sandoval, Omid Bakhtar, Jay Antico, Elizabeth T. Cirulli, Geraint Levan, William E. Lee, Tyler Cassens, Xianding Deng

Publikováno v: Cell, vol 184, iss 10
Cell

The highly transmissible B.1.1.7 variant of SARS-CoV-2, first identified in the United Kingdom, has gained a foothold across the world. Using S gene target failure (SGTF) and SARS-CoV-2 genomic sequencing, we investigated the prevalence and dynamics

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6156b6175639d01493ddbb60f74960c
https://escholarship.org/uc/item/2rw0t09q

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Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

Autor: Omid Bakhtar, Jay Antico, Brendan B. Larsen, Catelyn Anderson, Louise C. Laurent, Brett Austin, Nicole L. Washington, Simon R. White, Kelly M. Schiabor Barrett, Geraint Levan, Kristian G. Andersen, Eileen de Feo, Phoebe Seaver, Magnus Isaksson, Xianding Deng, Sharoni Jacobs, William E. Lee, Ezra Kurzban, Peter De Hoff, Candace Wang, Emily Spencer, Venice Servellita, Phil Febbo, Michael Worobey, Shashank Sathe, Kelly Hoon, Brad Sickler, David T.W. Wong, Jimmy M. Ramirez, Gene W. Yeo, Karthik Gangavarapu, Kimberly Gietzen, Jingtao Liu, Xueqing Wang, Efren Sandoval, Aaron Harding, Holly Valentine, Eric McDonald, Marc A. Suchard, Mark Zeller, Charlotte Rivera-Garcia, Charles Y. Chiu, Elizabeth T. Cirulli, David M. Becker, Marc Laurent, James T. Lu, Refugio Robles-Sikisaka, Jason Nguyen, Tracy Basler, Rob Knight, Alexandre Bolze, Tyler Cassens, Laura D. Hughes

Publikováno v: medRxiv
medRxiv, vol 2, iss 02-09

Author(s): Washington, Nicole L; Gangavarapu, Karthik; Zeller, Mark; Bolze, Alexandre; Cirulli, Elizabeth T; Schiabor Barrett, Kelly M; Larsen, Brendan B; Anderson, Catelyn; White, Simon; Cassens, Tyler; Jacobs, Sharoni; Levan, Geraint; Nguyen, Jason

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::979a6fd0cdd912a3c4aa1230a3806b88
https://pubmed.ncbi.nlm.nih.gov/33861950

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SARS-CoV-2 Variant Delta Rapidly Displaced Variant Alpha in the United States and Led to Higher Viral Loads

Publikováno v: SSRN Electronic Journal.

We report on the sequencing of 74,348 SARS-CoV-2 positive samples collected across the United States and show that the Delta variant, first detected in the United States in March 2021, made up the majority of SARS-CoV-2 infections by July 1, 2021 and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d7a7b49bbbdc71c2d2ec71d92b6ace91
https://doi.org/10.2139/ssrn.3952083

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