Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Tunc Kayikcioglu"'
Autor:
Ruth E. Timme, Jacquelina Woods, Jessica L. Jones, Kevin R. Calci, Rachel Rodriguez, Candace Barnes, Elizabeth Leard, Mark Craven, Haifeng Chen, Cameron Boerner, Christopher Grim, Amanda M. Windsor, Padmini Ramachandran, Tim Muruvanda, Hugh Rand, Bereket Tesfaldet, Jasmine Amirzadegan, Tunc Kayikcioglu, Tamara Walsky, Marc Allard, Maria Balkey, C. Hope Bias, Eric Brown, Kathryn Judy, Tina Pfefer, Sandra M. Tallent, Maria Hoffmann, James Pettengill
Publikováno v:
mSystems, Vol 9, Iss 6 (2024)
ABSTRACT Wastewater surveillance has emerged as a crucial public health tool for population-level pathogen surveillance. Supported by funding from the American Rescue Plan Act of 2021, the FDA‘s genomic epidemiology program, GenomeTrakr, was levera
Externí odkaz:
https://doaj.org/article/991f1e74cfc14debbf3259b310bfa957
Autor:
Kranti Konganti, Elizabeth Reed, Mark Mammel, Tunc Kayikcioglu, Rachel Binet, Karen Jarvis, Christina M. Ferreira, Rebecca L. Bell, Jie Zheng, Amanda M. Windsor, Andrea Ottesen, Christopher J. Grim, Padmini Ramachandran
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Most current Salmonella subtyping analyses rely on whole genome sequencing (WGS), which focuses on the high-resolution analysis of single genomes or multiple single genomes from the isolated colonies on microbiological agar plates. In this study, we
Externí odkaz:
https://doaj.org/article/d8e40a8dcf6e4f2bb858af13d2d2d531
Autor:
Tunc Kayikcioglu, Jasmine Amirzadegan, Hugh Rand, Bereket Tesfaldet, Ruth E. Timme, James B. Pettengill
Publikováno v:
PeerJ, Vol 11, p e14596 (2023)
Background The accurate identification of SARS-CoV-2 (SC2) variants and estimation of their abundance in mixed population samples (e.g., air or wastewater) is imperative for successful surveillance of community level trends. Assessing the performance
Externí odkaz:
https://doaj.org/article/894ab6afb7264642b951c88fab39d3a6
Autor:
Anustup Poddar, Muhammad S. Azam, Tunc Kayikcioglu, Maksym Bobrovskyy, Jichuan Zhang, Xiangqian Ma, Piyush Labhsetwar, Jingyi Fei, Digvijay Singh, Zaida Luthey-Schulten, Carin K. Vanderpool, Taekjip Ha
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Bacterial small RNA SgrS binds and regulates its primary target, ptsG mRNA. Here the authors employ Sort-Seq and super resolution imaging to investigate in vivo target recognition and rejection kinetics of SgrS.
Externí odkaz:
https://doaj.org/article/260d7031d6064787a1c0ef3b7e025390
Autor:
Kranti Konganti, Elizabeth Reed, Mark Mammel, Tunc Kayikcioglu, Rachel Binet, Karen Jarvis, Christina M. Ferreira, Rebecca L. Bell, Jie Zheng, Amanda M. Windsor, Andrea Ottesen, Christopher Grim, Padmini Ramachandran
Precise and rapid identification ofSalmonellaserotypes from suspect food matrices is critical for successful source attribution of illness outbreaks (Scallan et al., 2011). Currently, close to 3% of U.S. foodborneSalmonellaoutbreaks have been attribu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::85c14f4321a0a0b9b4e57f2c11bf9839
https://doi.org/10.1101/2023.04.06.535929
https://doi.org/10.1101/2023.04.06.535929
Autor:
Tunc Kayikcioglu, Jasmin S. Zarb, Sonisilpa Mohapatra, Chang-Ting Lin, James A. London, Kasper D. Hansen, Richard Fishel, Taekjip Ha
Whether due to mutagens or replication errors, DNA mismatches arise spontaneouslyin vivo. Unrepaired mismatches are sources of genetic variation and point mutations which can alter cellular phenotype and cause dysfunction, diseases, and cancer. To un
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::df97b5d38143b61a2250ef15a47e29fe
https://doi.org/10.1101/2023.01.08.523062
https://doi.org/10.1101/2023.01.08.523062
Autor:
Hossein Moghimianavval, Chintan Patel, Sonisilpa Mohapatra, Sung-Won Hwang, Tunc Kayikcioglu, Yashar Bashirzadeh, Allen P. Liu, Taekjip Ha
Publikováno v:
Small
Engineering synthetic interfaces between membranes has potential applications in designing non-native cellular communication pathways and creating synthetic tissues. Here, InterSpy is introduced as a synthetic biology tool consisting of a heterodimer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4bf16bc623bf958c9de4c855b0450df
https://doi.org/10.1002/smll.202202104
https://doi.org/10.1002/smll.202202104
PURPOSE: Step-by-step instructions for checking sequence quality for SARS-CoV-2 wastewater samples using SSQuAWK3: SARS - CoV - 2 Sequence Quality Assurance Workflow and Kontraption, version 3. The SSQuAWK3 workflow, implemented in CFSAN's custom Gal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c75f28b051591bf7518c8d92c9251551
https://doi.org/10.17504/protocols.io.b683rhyn
https://doi.org/10.17504/protocols.io.b683rhyn
This protocol describes the required steps to generate Illumina SampleSheet and provides guidelines for sharing data via BaseSpace with FDA for the 2021 Pilot Exercise V2: - added more details regarding data transfer through BaseSpace, including step
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::aff7b41d7d12fa457d732767782bc0d8
https://doi.org/10.17504/protocols.io.b2i3qcgn
https://doi.org/10.17504/protocols.io.b2i3qcgn
Autor:
H. Tomas Rube, Zan Qureshi, Tunc Kayikcioglu, Cynthia Wolberger, Sebastian Eustermann, Miroslav Hejna, Jun S. Song, Taekjip Ha, Aakash Basu, Thuy T.M. Ngo, Dmitriy G. Bobrovnikov, Basilio Cieza, Karl-Peter Hopfner, Michael T. Morgan, Anand Ranjan
Publikováno v:
Nature
Mechanical deformations of DNA such as bending are ubiquitous and have been implicated in diverse cellular functions1. However, the lack of high-throughput tools to measure the mechanical properties of DNA has limited our understanding of how DNA mec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c470362aa99a366579071c55403ba99