Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Tuan Tu Tran"'
Autor:
Ralf Koebnik, Mathilde Hutin, Boris Szurek, Tuan Tu Tran, Hinda Doucoure, L.M. Jaimes Niño, Sébastien Cunnac
Publikováno v:
MethodsX
MethodsX, 2018, 5, pp.1027-1032. ⟨10.1016/j.mex.2018.08.014⟩
MethodsX, Vol 5, Iss, Pp 1027-1032 (2018)
MethodsX, 2018, 5, pp.1027-1032. ⟨10.1016/j.mex.2018.08.014⟩
MethodsX, Vol 5, Iss, Pp 1027-1032 (2018)
Many plant-pathogenic xanthomonads use a type III secretion system to translocate Transcription Activator-Like (TAL) effectors into eukaryotic host cells where they act as transcription factors. Target genes are induced upon binding of a TAL effector
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e3c6d2434bff87fd1647d9de8657000
https://doi.org/10.1016/j.mex.2018.08.014
https://doi.org/10.1016/j.mex.2018.08.014
Autor:
Alvaro L. Pérez-Quintero, Pallavi Singh, Zoë E. Dubrow, Boris Szurek, Fabio C. Rinaldi, Erin L. Doyle, Li Wang, Tuan Tu Tran, Adam J. Bogdanove
Publikováno v:
Molecular Plant. 10:285-296
TAL effectors delivered by phytopathogenic Xanthomonas species are DNA-sequence-specific transcriptional activators of host susceptibility genes and sometimes resistance genes. The modularity of DNA recognition by TAL effectors makes them important a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5645241acd8ad58135615b6f3a12d3b
https://doi.org/10.1016/j.molp.2016.12.002
https://doi.org/10.1016/j.molp.2016.12.002
Publikováno v:
Parallel Computing. 54:128-138
Advanced SIMD features on GPUs and Xeon Phis promote efficient long pattern search.A tiled approach to accelerating the Wu-Manber algorithm on GPUs has been proposed.Both the GPU and Xeon Phi yield two orders-of-magnitude speedup over one CPU core.Th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::cfbc4ce6b24ef5d391d8aa8fb98a8d6f
https://doi.org/10.1016/j.parco.2015.11.001
https://doi.org/10.1016/j.parco.2015.11.001
Autor:
Sara C. D. Carpenter, Valérie Verdier, Boris Szurek, Mathilde Hutin, Adam J. Bogdanove, Tuan Tu Tran, Yanhua Yu, Jan E. Leach, Ralf Koebnik, Li Wang, Sébastien Cunnac, Alvaro L. Pérez-Quintero, Issa Wonni
Publikováno v:
PLoS Pathogens
PLoS Pathogens, 2018, 14 (6), pp.e1007092. ⟨10.1371/journal.ppat.1007092⟩
PLoS Pathogens, Vol 14, Iss 6, p e1007092 (2018)
PLoS Pathogens, 2018, 14 (6), pp.e1007092. ⟨10.1371/journal.ppat.1007092⟩
PLoS Pathogens, Vol 14, Iss 6, p e1007092 (2018)
Most Xanthomonas species translocate Transcription Activator-Like (TAL) effectors into plant cells where they function like plant transcription factors via a programmable DNA-binding domain. Characterized strains of rice pathogenic X. oryzae pv. oryz
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1a72e3649822962174496f4969c4f11
Publikováno v:
The International Journal of High Performance Computing Applications. 30:200-211
Clustering of molecular systems according to their three-dimensional structure is an important step in many bioinformatics workflows. In applications such as docking or structure prediction, many algorithms initially generate large numbers of candida
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::96396ae305a9a661d85701f8c4a0fd12
https://doi.org/10.1177/1094342015597988
https://doi.org/10.1177/1094342015597988
Autor:
Stella Cesari, Corinne Michel, Véronique Chalvon, Jens Boch, Boris Szurek, Mathilde Hutin, Tuan Tu Tran, Thomas Kroj, Ralf Koebnik
Publikováno v:
Plant Journal
Plant Journal, Wiley, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Plant Journal, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Plant Journal 1 (88), 43-55. (2016)
Plant Journal, Wiley, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Plant Journal, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Plant Journal 1 (88), 43-55. (2016)
BGPI : Equipe 4 : Interactions Céréales Agents Pathogènes (ICAP); International audience; Bacterial Blight (BB) and Bacterial Leaf Streak (BLS) are important rice diseases caused,respectively, by Xanthomonas oryzae pv. oryzae (Xoo) and Xanthomonas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0413ebc9d8874b346b446a9a95db896
https://pubmed.ncbi.nlm.nih.gov/27289079
https://pubmed.ncbi.nlm.nih.gov/27289079
Publikováno v:
IPDPS Workshops
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015)
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015)
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩
International audience; Seed-based heuristics have proved to be efficient for studying similarity between genetic databases with billions of base pairs. This paper focuses on algorithms and data structures for the filtering phase in seed-based heuris
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b452440c52cd917c6774c469fcb62536
https://doi.org/10.1109/ipdpsw.2015.105
https://doi.org/10.1109/ipdpsw.2015.105
Akademický článek
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Akademický článek
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Publikováno v:
CLUSTER
As an optimal method for sequence alignment, the Smith-Waterman (SW) algorithm is widely used. Unfortunately, this algorithm is computationally demanding, especially for long sequences. This has motivated the investigation of its acceleration on a va
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1cf73a7b2f35a93efccfb7e2595a39b4
https://doi.org/10.1109/cluster.2014.6968772
https://doi.org/10.1109/cluster.2014.6968772