Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa

Autor: Magnúsdóttir, S., Saraiva, J., Bartholomäus, A., Soheili, M., Toscan, R., Zhang, J., Nunes da Rocha, U.

Publikováno v: Frontiers in Microbiology

IntroductionEvery year, millions of deaths are associated with the increased spread of antimicrobial resistance genes (ARGs) in bacteria. With the increasing urbanization of the global population, the spread of ARGs in urban bacteria has become a mor

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f7a7a87d7840fa8a689444986d8209c
https://gfzpublic.gfz-potsdam.de/pubman/item/item_5015834_1/component/file_5015845/5015834.pdf

Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome.

Autor: Keller-Costa T; Institute for Bioengineering and Biosciences, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal. tinakellercosta@tecnico.ulisboa.pt.; Associate Laboratory i4HB - Institute for Health and Bioeconomy, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal. tinakellercosta@tecnico.ulisboa.pt., Kozma L; Institute for Bioengineering and Biosciences, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.; École Polytechnique Fédérale de Lausanne, Écublens, Switzerland., Silva SG; Institute for Bioengineering and Biosciences, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal.; Associate Laboratory i4HB - Institute for Health and Bioeconomy, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal., Toscan R; Helmholtz Centre for Environmental Research, Leipzig, Germany., Gonçalves J; Centro de Ciências Do Mar, Universidade Do Algarve, Faro, Portugal., Lago-Lestón A; Centro de Investigación Científica Y de Educación Superior de Ensenada, Ensenada, Mexico., Kyrpides NC; Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Nunes da Rocha U; Helmholtz Centre for Environmental Research, Leipzig, Germany., Costa R; Institute for Bioengineering and Biosciences, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal. rodrigoscosta@tecnico.ulisboa.pt.; Associate Laboratory i4HB - Institute for Health and Bioeconomy, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal. rodrigoscosta@tecnico.ulisboa.pt.; Centro de Ciências Do Mar, Universidade Do Algarve, Faro, Portugal. rodrigoscosta@tecnico.ulisboa.pt.

Publikováno v: Microbiome [Microbiome] 2022 Sep 22; Vol. 10 (1), pp. 151. Date of Electronic Publication: 2022 Sep 22.

PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning.

Autor: Oliveira Monteiro LM; Helmholtz Center for Environmental Research (UFZ), Leipzig, Germany.; Bioinformatics Group, Institute of Computer Science, Universität Leipzig, Leipzig, Germany.; Ribeirão Preto Medical School (FMRP), University of São Paulo (USP), Ribeirão Prêto, Brazil., Saraiva JP; Helmholtz Center for Environmental Research (UFZ), Leipzig, Germany., Brizola Toscan R; Helmholtz Center for Environmental Research (UFZ), Leipzig, Germany., Stadler PF; Bioinformatics Group, Institute of Computer Science, Universität Leipzig, Leipzig, Germany., Silva-Rocha R; Ribeirão Preto Medical School (FMRP), University of São Paulo (USP), Ribeirão Prêto, Brazil., Nunes da Rocha U; Helmholtz Center for Environmental Research (UFZ), Leipzig, Germany. ulisses.rocha@ufz.de.

Publikováno v: Environmental microbiome [Environ Microbiome] 2022 Feb 08; Vol. 17 (1), pp. 7. Date of Electronic Publication: 2022 Feb 08.

Metagenomic Insight into the Prevalence and Distribution of Antibiotic Resistance Genes in China's Largest Freshwater Lake.

Autor: Shuli Liu¹ liushuli0203@163.com, Jinli Yu² yjiyjl@163.com, Minfei Jian^1,3 jianminfei@jxnu.edu.cn, Qiwu Hu² huqiwu1979@gmail.com, Long Zou¹ zoulong@jxnu.edu.cn

Publikováno v: Polish Journal of Environmental Studies. 2024, Vol. 33 Issue 5, p5521-5531. 11p.

Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters.

Autor: Kallies R; Helmholtz Centre for Environmental Research - UFZ, Department of Environmental Microbiology, 04318 Leipzig, Germany. rene.kallies@ufz.de., Hölzer M; Friedrich Schiller University Jena, RNA Bioinformatics and High-Throughput Analysis, 07743 Jena, Germany. martin.hoelzer@uni-jena.de.; European Virus Bioinformatics Center, 07743 Jena, Germany. martin.hoelzer@uni-jena.de., Brizola Toscan R; Helmholtz Centre for Environmental Research - UFZ, Department of Environmental Microbiology, 04318 Leipzig, Germany. rodolfo.toscan@ufz.de., Nunes da Rocha U; Helmholtz Centre for Environmental Research - UFZ, Department of Environmental Microbiology, 04318 Leipzig, Germany. ulisses.rocha@ufz.de., Anders J; Helmholtz Centre for Environmental Research - UFZ, Department of Environmental Microbiology, 04318 Leipzig, Germany. johnanders@posteo.de.; Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, University Leipzig, 04081 Leipzig, Germany. johnanders@posteo.de., Marz M; Friedrich Schiller University Jena, RNA Bioinformatics and High-Throughput Analysis, 07743 Jena, Germany. manja@uni-jena.de.; European Virus Bioinformatics Center, 07743 Jena, Germany. manja@uni-jena.de.; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany. manja@uni-jena.de., Chatzinotas A; Helmholtz Centre for Environmental Research - UFZ, Department of Environmental Microbiology, 04318 Leipzig, Germany. antonis.chatzinotas@ufz.de.; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany. antonis.chatzinotas@ufz.de.

Publikováno v: Viruses [Viruses] 2019 May 28; Vol. 11 (6). Date of Electronic Publication: 2019 May 28.