Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Toru Niina"'
Autor:
Noriyo Mitome, Shintaroh Kubo, Sumie Ohta, Hikaru Takashima, Yuto Shigefuji, Toru Niina, Shoji Takada
Publikováno v:
eLife, Vol 11 (2022)
In FoF1-ATP synthase, proton translocation through Fo drives rotation of the c-subunit oligomeric ring relative to the a-subunit. Recent studies suggest that in each step of the rotation, key glutamic acid residues in different c-subunits contribute
Externí odkaz:
https://doaj.org/article/485c1da552a743dbaa17caac2a93fe89
Publikováno v:
PLoS Computational Biology, Vol 17, Iss 7, p e1009215 (2021)
Atomic force microscopy (AFM) can visualize functional biomolecules near the physiological condition, but the observed data are limited to the surface height of specimens. Since the AFM images highly depend on the probe tip shape, for successful infe
Externí odkaz:
https://doaj.org/article/c1bf236f10b544b0afa04f3ccd3d9337
Publikováno v:
Frontiers in Molecular Biosciences, Vol 8 (2021)
The atomic force microscopy (AFM) is a powerful tool for imaging structures of molecules bound on surfaces. To gain high-resolution structural information, one often superimposes structure models on the measured images. Motivated by high flexibility
Externí odkaz:
https://doaj.org/article/20d9c19f4732405fa3b28f12cab95fdd
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 12, p e1005880 (2017)
While nucleosome positioning on eukaryotic genome play important roles for genetic regulation, molecular mechanisms of nucleosome positioning and sliding along DNA are not well understood. Here we investigated thermally-activated spontaneous nucleoso
Externí odkaz:
https://doaj.org/article/5651a741c70845d89102de992111a6f1
The stoichiometric interaction model for mesoscopic MD simulations of liquid-liquid phase separation
Publikováno v:
Biophysical Journal. 121:4382-4393
Liquid-liquid phase separation (LLPS) has received considerable attention in recent years for explaining the formation of cellular biomolecular condensates. The fluidity and the complexity of their components make molecular simulation approaches indi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be307349835073c5fd5f11db08a4f8a1
https://doi.org/10.1016/j.bpj.2022.10.001
https://doi.org/10.1016/j.bpj.2022.10.001
Publikováno v:
Biophysical Journal.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::507409e08b02db3e07571b4a6c4d9e3d
https://doi.org/10.1016/j.bpj.2022.09.034
https://doi.org/10.1016/j.bpj.2022.09.034
Publikováno v:
Biophysical journal.
F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::d0bda9277a7cd3ef58aa85dc42b1060d
https://pubmed.ncbi.nlm.nih.gov/36171725
https://pubmed.ncbi.nlm.nih.gov/36171725
Publikováno v:
Journal of Chemical Theory and Computation. 16:6609-6619
High-speed atomic force microscopy (HS-AFM) can be used to observe the structural dynamics of biomolecules at the single-molecule level in real time under near-physiological conditions; however, its spatiotemporal resolution is limited. Complementari
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1815e425312355f8962611f6b63dd3cb
https://doi.org/10.1021/acs.jctc.0c00234
https://doi.org/10.1021/acs.jctc.0c00234
Publikováno v:
Scientific Reports, Vol 10, Iss 1, Pp 1-16 (2020)
The FO motor in FOF1 ATP synthase rotates its rotor driven by the proton motive force. While earlier studies elucidated basic mechanisms therein, recent advances in high-resolution cryo-electron microscopy enabled to investigate proton-transfer coupl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5aff5e430ee04d2433757616add79914
http://link.springer.com/article/10.1038/s41598-020-65004-1
http://link.springer.com/article/10.1038/s41598-020-65004-1
Liquid-liquid phase separation (LLPS) has received considerable attention in recent years for explaining the formation of cellular biomolecular condensates. The fluidity and the complexity of their components make molecular simulation approaches indi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0a894f823df7a82dfa3bbae37ba0bf99
https://doi.org/10.1101/2022.04.19.488761
https://doi.org/10.1101/2022.04.19.488761
