Zobrazeno 1 - 10
of 119
pro vyhledávání: '"Tools for Protein Science"'
Autor:
Janet M. Thornton, Roman A. Laskowski
Publikováno v:
Protein Science : A Publication of the Protein Society
The PDBsum web server provides structural analyses of the entries in the Protein Data Bank (PDB). Two recent additions are described here. The first is the detailed analysis of the SARS‐CoV‐2 virus protein structures in the PDB. These include the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::905b88c3337be5f4315b6c43ad2ffe11
https://doi.org/10.1002/pro.4238
https://doi.org/10.1002/pro.4238
Autor:
Gabriel Wright, Tijana Milenkovic, Patricia L. Clark, Scott J. Emrich, Anabel Rodriguez, Jun Li
Publikováno v:
Protein Sci
There is a growing appreciation that synonymous codon usage, although historically regarded as phenotypically silent, can instead alter a wide range of mechanisms related to functional protein production, a term we use here to describe the net effect
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a84ed6419968af23435b556ad81b8d15
https://doi.org/10.1002/pro.4223
https://doi.org/10.1002/pro.4223
Publikováno v:
Protein Sci
Cellular protrusions, invaginations, and many intracellular organelles have strongly curved membrane regions. Transmembrane and peripheral membrane proteins that induce, sense, or stabilize such regions cannot be properly fitted into a single flat bi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c7c885da9be53493ced1fae46af5fc8
https://doi.org/10.1002/pro.4219
https://doi.org/10.1002/pro.4219
Autor:
Stephen K. Burley, Zukang Feng, John D. Westbrook, Andrej Sali, Justin W Flatt, Rachel Kramer Green, Chenghua Shao, Sai J. Ganesan, Sutapa Ghosh, Brinda Vallat, David S. Goodsell, Jeremy Henry, Christine Zardecki, Joan Segura, Ezra Peisach, Charmi Bhikadiya, Catherine L. Lawson, Jose M. Duarte, Brian P. Hudson, Irina Persikova, Chunxiao Bi, Gregg V. Crichlow, Robert Lowe, Monica Sekharan, Jasmine Young, Shamara Whetstone, Li Chen, Vladimir Guranovic, Yu-He Liang, Dennis W Piehl, Maryam Fayazi, Maria Voigt, Sebastian Bittrich, Shuchismita Dutta, Yana Rose
Publikováno v:
Protein Sci
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the US National Science Foundation, National Institutes of Health, and Department of Energy, has served structural biologists and Protein Data Bank (PDB)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6228c32dd89013c7b715bdae16133fd0
https://doi.org/10.1002/pro.4213
https://doi.org/10.1002/pro.4213
Autor:
Gert-Jan Bekker, Takahiro Kudou, Yasuyo Ikegawa, Takeshi Kawabata, Masashi Yokochi, Genji Kurisu, Hirofumi Suzuki, Kei Yura, Toshimichi Fujiwara, Takeshi Iwata
Publikováno v:
Protein Science : A Publication of the Protein Society
Protein Data Bank Japan (PDBj), a founding member of the worldwide Protein Data Bank (wwPDB) has accepted, processed and distributed experimentally determined biological macromolecular structures for 20 years. During that time, we have continuously m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1aa6259017ae3d35c0f9f3c1b145403
https://doi.org/10.1002/pro.4211
https://doi.org/10.1002/pro.4211
Autor:
Robert Lowe, Shuchismita Dutta, Christine Zardecki, Maria Voigt, Stephen K. Burley, David S. Goodsell
Publikováno v:
Protein Sci
The Protein Data Bank (PDB) archive is a rich source of information in the form of atomic-level 3D structures of biomolecules experimentally determined using macromolecular crystallography (MX), nuclear magnetic resonance (NMR) spectroscopy, and elec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b50e60639451ddc6f8562191ff6c1eb
https://doi.org/10.1002/pro.4200
https://doi.org/10.1002/pro.4200
Autor:
Martin Zacharias
Publikováno v:
Protein Science : A Publication of the Protein Society
In order to generate protein assemblies with a desired function, the rational design of protein–protein binding interfaces is of significant interest. Approaches based on random mutagenesis or directed evolution may involve complex experimental sel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f5725651fe0c3e6f1b6eef3c76e48f9c
http://europepmc.org/articles/PMC8740833
http://europepmc.org/articles/PMC8740833
Publikováno v:
Protein Sci
The antimicrobial peptide database (APD) has served the antimicrobial peptide field for 18 years. Because it is widely used in research and education, this article documents database milestones and key events that have transformed it into the current
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89a0019ce2f5599a1b071607325cfdfc
https://doi.org/10.1002/pro.4185
https://doi.org/10.1002/pro.4185
Autor:
Ian J. Fucci, R. Andrew Byrd
Publikováno v:
Protein Sci
Nuclear magnetic resonance (NMR) provides site specific information on local environments through chemical shifts. NMR is widely used in the study of proteins, ranging from determination of three-dimensional (3D) structures to characterizing dynamics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de0ed09095e9042d2f5e4c819a046301
https://doi.org/10.1002/pro.4181
https://doi.org/10.1002/pro.4181
Autor:
Tucker L Apgar, Charles R. Sanders
Publikováno v:
Protein Sci
A compendium is presented of inherited monogenic disorders that have a prevalence of >1:20,000 in the human population, along with their causative genes and encoded proteins. “Simple” monogenic diseases are those for which the clinical features a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4cf9e2d1aa78d70abd650ec6291f1479
https://doi.org/10.1002/pro.4183
https://doi.org/10.1002/pro.4183