Single-molecule mechanical fingerprinting with DNA nanoswitch calipers.

Autor: Shrestha P; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA., Yang D; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA., Tomov TE; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA., MacDonald JI; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA., Ward A; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA., Bergal HT; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Biophysics Program, Harvard University, Cambridge, MA, USA., Krieg E; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA., Cabi S; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA., Luo Y; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA., Nathwani B; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA., Johnson-Buck A; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Biophysics Program, Harvard University, Cambridge, MA, USA., Shih WM; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA. William_Shih@dfci.harvard.edu.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. William_Shih@dfci.harvard.edu.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. William_Shih@dfci.harvard.edu., Wong WP; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA. Wesley.Wong@childrens.harvard.edu.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA. Wesley.Wong@childrens.harvard.edu.; Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. Wesley.Wong@childrens.harvard.edu.

Publikováno v: Nature nanotechnology [Nat Nanotechnol] 2021 Dec; Vol. 16 (12), pp. 1362-1370. Date of Electronic Publication: 2021 Oct 21.

DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.

Autor: Khara DC; Ben-Gurion University of the Negev, Beer-Sheva and the Ilse Katz Institute for Nanoscale Science and Technology, P.O. Box 653, Beer-Sheva, 8410501, Israel., Schreck JS; Department of Chemical Engineering, Columbia University, 500 W 120th Street, New York, NY 10027, USA., Tomov TE; Ben-Gurion University of the Negev, Beer-Sheva and the Ilse Katz Institute for Nanoscale Science and Technology, P.O. Box 653, Beer-Sheva, 8410501, Israel., Berger Y; Ben-Gurion University of the Negev, Beer-Sheva and the Ilse Katz Institute for Nanoscale Science and Technology, P.O. Box 653, Beer-Sheva, 8410501, Israel., Ouldridge TE; Department of Bioengineering, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Doye JPK; Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, UK., Nir E; Ben-Gurion University of the Negev, Beer-Sheva and the Ilse Katz Institute for Nanoscale Science and Technology, P.O. Box 653, Beer-Sheva, 8410501, Israel.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2018 Feb 16; Vol. 46 (3), pp. 1553-1561.

DNA Bipedal Motor Achieves a Large Number of Steps Due to Operation Using Microfluidics-Based Interface.

Autor: Tomov TE; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva, 84105, Israel., Tsukanov R; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva, 84105, Israel., Glick Y; Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University , Ramat-Gan 5290002, Israel., Berger Y; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva, 84105, Israel., Liber M; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva, 84105, Israel., Avrahami D; Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University , Ramat-Gan 5290002, Israel., Gerber D; Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University , Ramat-Gan 5290002, Israel., Nir E; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva, 84105, Israel.

Publikováno v: ACS nano [ACS Nano] 2017 Apr 25; Vol. 11 (4), pp. 4002-4008. Date of Electronic Publication: 2017 Apr 14.

Photon-by-Photon Hidden Markov Model Analysis for Microsecond Single-Molecule FRET Kinetics.

Autor: Pirchi M; Department of Chemical Physics, Weizmann Institute of Science , Rehovot 76100, Israel., Tsukanov R; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel., Khamis R; Department of Chemical Physics, Weizmann Institute of Science , Rehovot 76100, Israel., Tomov TE; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel., Berger Y; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel., Khara DC; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel., Volkov H; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel., Haran G; Department of Chemical Physics, Weizmann Institute of Science , Rehovot 76100, Israel., Nir E; Department of Chemistry and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev , Beer Sheva 84105, Israel.

Publikováno v: The journal of physical chemistry. B [J Phys Chem B] 2016 Dec 29; Vol. 120 (51), pp. 13065-13075. Date of Electronic Publication: 2016 Dec 15.

Nucleosome Core Particle Disassembly and Assembly Kinetics Studied Using Single-Molecule Fluorescence.

Autor: Hazan NP; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Tomov TE; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Tsukanov R; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Liber M; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Berger Y; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Masoud R; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel., Toth K; Division of Biophysics of Macromolecules, German Cancer Research Center, Heidelberg, Germany., Langowski J; Division of Biophysics of Macromolecules, German Cancer Research Center, Heidelberg, Germany., Nir E; Department of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel. Electronic address: eyalnir@bgu.ac.il.

Publikováno v: Biophysical journal [Biophys J] 2015 Oct 20; Vol. 109 (8), pp. 1676-85.