An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Autor: Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli

Publikováno v: Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)

Abstract Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advanced the field

Externí odkaz: https://doaj.org/article/b0b847aec1154062a3c86bac14d94e55

Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning

Autor: Silvia Crivelli, Shokoufeh Mirzaei, Tomer Sidi, Chen Keasar

Publikováno v: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16:1515-1523

The function of a protein is determined by its structure, which creates a need for efficient methods of protein structure determination to advance scientific and medical research. Because current experimental structure determination methods carry a h

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85000f71dea043cb6a36fc46a6d04430
https://doi.org/10.1109/tcbb.2016.2602269

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Autor: Shah U, Lim Heo, Renzhi Cao, Chaok Seok, Gaurav Chopra, Soma Ghosh, Phanourios Tamamis, Maghrabi Aha, Sergey Ovchinnikov, Hailong Li, Chris A. Kieslich, Dhanasekaran Bk, Milot Mirdita, Rafał Ślusarz, Adam Liwo, Kim De, Gyu Rie Lee, Michael Levitt, James Smadbeck, Blake L, Adam K. Sieradzan, Seth Cooper, Andrzej Kloczkowski, Zoran Popović, Rodrigo Antonio Faccioli, Cezary Czaplewski, Yuxin Yin, Jie Hou, Brian Koepnick, Shah A, Jilong Li, Maciej Baranowski, Chen Keasar, Yang Zhang, Delbem Acb, Magdalena A. Mozolewska, Christodoulos A. Floudas, Agnieszka G. Lipska, Badri Adhikari, Yi He, Dimas I, Leandro Oliveira Bortot, Liam J. McGuffin, Paweł Krupa, Bartłomiej Zaborowski, David Baker, Alexandre Defelicibus, Eshel Faraggi, Melis Onel, Johannes Söding, Tomasz K Wirecki, Jeff Flatten, Jianlin Cheng, Firas Khatib, Dong Xu, Silvia Crivelli, Stanisław Ołdziej, Saraswathi Vishveshwara, Debswapna Bhattacharya, Golon L, George A. Khoury, Harold A. Scheraga, Artur Giełdoń, Jaume Bacardit, Chapman N, Björn Wallner, Shokoufeh Mirzaei, Khan M, Magdalena J. Ślusarz, Tomer Sidi, Trieber N, Robert Ganzynkowicz

Publikováno v: Scientific reports, vol 8, iss 1
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)

Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advanced the field but many

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea265f961e83f6d8e56d90a5eb07cede
https://escholarship.org/uc/item/5jp72387