Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Tomasz Puton"'
Publikováno v:
Nucleic Acids Research
We present a continuous benchmarking approach for the assessment of RNA secondary structure prediction methods implemented in the CompaRNA web server. As of 3 October 2012, the performance of 28 single-sequence and 13 comparative methods has been eva
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36942b361f1d0cfb3a397b10c56e0ef4
https://doi.org/10.1093/nar/gkt101
https://doi.org/10.1093/nar/gkt101
Publikováno v:
Journal of Structural Biology. 179:261-268
Understanding the molecular mechanism of protein-RNA recognition and complex formation is a major challenge in structural biology. Unfortunately, the experimental determination of protein-RNA complexes by X-ray crystallography and nuclear magnetic re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8786b14bf212b84624ba91461b3bf2c8
https://doi.org/10.1016/j.jsb.2011.10.001
https://doi.org/10.1016/j.jsb.2011.10.001
Autor:
Katarzyna Mikolajczak, Alexander Serganov, Christina Waldsich, Song Cao, Anna Philips, Samuel C. Flores, Rhiju Das, Magdalena Rother, Dinshaw J. Patel, Christopher A. Lavender, Tomasz Puton, Fredrick Sijenyi, Irina Tuszynska, Michal J. Boniecki, John SantaLucia, Kevin M. Weeks, Marcin Skorupski, José Almeida Cruz, Lili Huang, Parin Sripakdeevong, Marc Frédérick Blanchet, Janusz M. Bujnicki, Shi-Jie Chen, Thomas Hermann, François Major, Nikolay V. Dokholyan, Tomasz Sołtysiński, Kristian Rother, Eric Westhof, Michael Wildauer, Neocles B. Leontis, Feng Ding, Véronique Lisi
Publikováno v:
RNA. 18:610-625
We report the results of a first, collective, blind experiment in RNA three-dimensional (3D) structure prediction, encompassing three prediction puzzles. The goals are to assess the leading edge of RNA structure prediction techniques; compare existin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bd4efb7aa9ecba8d38c9bc26d7f039c
https://doi.org/10.1261/rna.031054.111
https://doi.org/10.1261/rna.031054.111
Publikováno v:
Nucleic Acids Research
RNA is a large group of functionally important biomacromolecules. In striking analogy to proteins, the function of RNA depends on its structure and dynamics, which in turn is encoded in the linear sequence. However, while there are numerous methods f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e60e7491d59693f23550ea441bfd7d97
http://europepmc.org/articles/PMC3105415
http://europepmc.org/articles/PMC3105415
Publikováno v:
Journal of Molecular Modeling
In analogy to proteins, the function of RNA depends on its structure and dynamics, which are encoded in the linear sequence. While there are numerous methods for computational prediction of protein 3D structure from sequence, there have been very few
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa1f29134e8d2e9298ec9e3797705a19
https://doi.org/10.1007/s00894-010-0951-x
https://doi.org/10.1007/s00894-010-0951-x
Publikováno v:
XIV RNA Conference Abstract Book.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=erc_________::c1e6eae065d94c6a31446cfd6a1a2af7
Autor:
Janusz M. Bujnicki, Kristian Rother, Paweł Łukasz, Magdalena Rother, Tomasz Puton, Konrad Tomala, Michal J. Boniecki
Publikováno v:
Nucleic Acids and Molecular Biology ISBN: 9783642257391
In analogy to proteins, the function of RNA depends on its structure and dynamics, which are encoded in the linear sequence. While there are numerous methods for computational prediction of protein 3D structure from sequence, there have been however
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f4794be50c51fa8bda71adf9e23fccd3
https://doi.org/10.1007/978-3-642-25740-7_5
https://doi.org/10.1007/978-3-642-25740-7_5
Publikováno v:
Briefings in Bioinformatics
Noncoding RNAs perform important roles in the cell. As their function is tightly connected with structure, and as experimental methods are time-consuming and expensive, the field of RNA structure prediction is developing rapidly. Here, we present a d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f8abaf944fb720acfb259b9cf26c66bf
Autor:
Wojciech Potrzebowski, Ewa Wywial, Janusz M. Bujnicki, Magdalena Rother, Kristian Rother, Tomasz Puton
Publikováno v:
Briefings in Bioinformatics
Creating useful software is a major activity of many scientists, including bioinformaticians. Nevertheless, software development in an academic setting is often unsystematic, which can lead to problems associated with maintenance and long-term availi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::58fe154d40724d1602826c7df82a3940
Autor:
Magdalena Rother, Tomasz Puton, Kaja Milanowska, Kristian Rother, Jaroslaw Jeleniewicz, Janusz M. Bujnicki
Publikováno v:
Bioinformatics (Oxford, England). 27(17)
Summary: The diverse functional roles of non-coding RNA molecules are determined by their underlying structure. ModeRNA server is an online tool for RNA 3D structure modeling by the comparative approach, based on a template RNA structure and a user-d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff365852d7548173ca4ac90fe3deed94
https://pubmed.ncbi.nlm.nih.gov/21727140
https://pubmed.ncbi.nlm.nih.gov/21727140