Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Tomasz K. Wirecki"'
Autor:
Astha Joshi, Chandran Nithin, Janusz M. Bujnicki, Tomasz K Wirecki, Filip Stefaniak, Pritha Ghosh
Publikováno v:
Ribozymes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3323ebbb9d128fbacfa053a36aedf5af
https://doi.org/10.1002/9783527814527.ch33
https://doi.org/10.1002/9783527814527.ch33
Autor:
Filip Stefaniak, Janusz M. Bujnicki, Tomasz K Wirecki, Katarzyna Merdas, Agata Bernat, Michal J. Boniecki
Publikováno v:
Nucleic Acids Research
RNA molecules play key roles in all living cells. Knowledge of the structural characteristics of RNA molecules allows for a better understanding of the mechanisms of their action. RNA chemical probing allows us to study the susceptibility of nucleoti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::045952eda2ae0610a426e661fa2c5abe
https://doi.org/10.1093/nar/gkaa396
https://doi.org/10.1093/nar/gkaa396
Autor:
Emilia A. Lubecka, Tomasz K Wirecki, Mariusz Makowski, Agnieszka S. Karczyńska, Agnieszka G. Lipska, Paweł Krupa, Adam Liwo, Adam K. Sieradzan, Stanisław Ołdziej, Ewa Gołaś, Magdalena A. Mozolewska, Cezary Czaplewski
Publikováno v:
Protein Folding ISBN: 9781071617151
The physics-based united-residue (UNRES) model of proteins ( www.unres.pl ) has been designed to carry out large-scale simulations of protein folding. The force field has been derived and parameterized based on the principles of statistical-mechanics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b7c157ffd4e3689033dd069f78e0c20d
https://doi.org/10.1007/978-1-0716-1716-8_23
https://doi.org/10.1007/978-1-0716-1716-8_23
Autor:
Janusz M. Bujnicki, Ilaria Manfredonia, Chandran Nithin, Tycho Marinus, Almudena Ponce-Salvatierra, Eric J. Snijder, Natacha S. Ogando, Tomasz K Wirecki, Martijn J. van Hemert, Danny Incarnato, Pritha Ghosh
Publikováno v:
Nucleic Acids Research, 48(22), 12436-12452. Oxford University Press
Nucleic Acids Research
Nucleic Acids Research, 48(22), 12436-12452. OXFORD UNIV PRESS
Nucleic Acids Research
Nucleic Acids Research, 48(22), 12436-12452. OXFORD UNIV PRESS
SARS-CoV-2 is a betacoronavirus with a linear single-stranded, positive-sense RNA genome, whose outbreak caused the ongoing COVID-19 pandemic. The ability of coronaviruses to rapidly evolve, adapt, and cross species barriers makes the development of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2249486d3e1296679e51bb8952f0bd00
https://research.rug.nl/en/publications/0b144e0a-679e-47fa-b252-7e0567b09623
https://research.rug.nl/en/publications/0b144e0a-679e-47fa-b252-7e0567b09623
Autor:
Tomasz K, Wirecki, Chandran, Nithin, Sunandan, Mukherjee, Janusz M, Bujnicki, Michał J, Boniecki
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2165
The molecules of the ribonucleic acid (RNA) perform a variety of vital roles in all living cells. Their biological function depends on their structure and dynamics, both of which are difficult to experimentally determine but can be theoretically infe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::e438edb6d4444f028353a3f71328d5a3
https://pubmed.ncbi.nlm.nih.gov/32621221
https://pubmed.ncbi.nlm.nih.gov/32621221
Autor:
Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, Natacha S. Ogando, Eric J. Snider, Martijn J. van Hemert, Janusz M. Bujnicki, Danny Incarnato
SummarySARS-CoV-2 is a betacoronavirus with a linear single-stranded, positive-sense RNA genome of ∼30 kb, whose outbreak caused the still ongoing COVID-19 pandemic. The ability of coronaviruses to rapidly evolve, adapt, and cross species barriers
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2f5e2c4eb9b60c94fa66b35d99103253
https://doi.org/10.1101/2020.06.15.151647
https://doi.org/10.1101/2020.06.15.151647
Autor:
Michal J. Boniecki, Chandran Nithin, Sunandan Mukherjee, Janusz M. Bujnicki, Tomasz K Wirecki
Publikováno v:
Methods in Molecular Biology ISBN: 9781071607077
The molecules of the ribonucleic acid (RNA) perform a variety of vital roles in all living cells. Their biological function depends on their structure and dynamics, both of which are difficult to experimentally determine but can be theoretically infe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ab9739119d3953a9df31eb9d9e6d12d7
https://doi.org/10.1007/978-1-0716-0708-4_6
https://doi.org/10.1007/978-1-0716-0708-4_6
Autor:
Robert L. Ross, Patrick A. Limbach, Pietro Boccaletto, Pawel Piatkowski, Mark Helm, Elzbieta Purta, Magdalena A. Machnicka, Janusz M. Bujnicki, Błażej Bagiński, Annika Kotter, de Crécy-Lagard, Tomasz K Wirecki
Publikováno v:
Nucleic Acids Research
MODOMICS is a database of RNA modifications that provides comprehensive information concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways, the location of modified residues in RNA sequences, and RNA-modifying enz
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ca23d4d510027889812435b4ea75d49
http://europepmc.org/articles/PMC5753262
http://europepmc.org/articles/PMC5753262
Autor:
Pietro Boccaletto, Tomasz K Wirecki, Filip Stefaniak, Catarina F. Almeida, Astha Astha, Stanislaw Dunin-Horkawicz, Adriana Zyla, Elzbieta Jankowska, Radoslaw Pluta, Michal J. Boniecki, Marcin Magnus, Janusz M. Bujnicki, Błażej Bagiński
Publikováno v:
Nucleic Acids Research
RNArchitecture is a database that provides a comprehensive description of relationships between known families of structured non-coding RNAs, with a focus on structural similarities. The classification is hierarchical and similar to the system used i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4840d032982b3eb2841ecc1b75528d31
http://europepmc.org/articles/PMC5753356
http://europepmc.org/articles/PMC5753356
Autor:
Shah U, Lim Heo, Renzhi Cao, Chaok Seok, Gaurav Chopra, Soma Ghosh, Phanourios Tamamis, Maghrabi Aha, Sergey Ovchinnikov, Hailong Li, Chris A. Kieslich, Dhanasekaran Bk, Milot Mirdita, Rafał Ślusarz, Adam Liwo, Kim De, Gyu Rie Lee, Michael Levitt, James Smadbeck, Blake L, Adam K. Sieradzan, Seth Cooper, Andrzej Kloczkowski, Zoran Popović, Rodrigo Antonio Faccioli, Cezary Czaplewski, Yuxin Yin, Jie Hou, Brian Koepnick, Shah A, Jilong Li, Maciej Baranowski, Chen Keasar, Yang Zhang, Delbem Acb, Magdalena A. Mozolewska, Christodoulos A. Floudas, Agnieszka G. Lipska, Badri Adhikari, Yi He, Dimas I, Leandro Oliveira Bortot, Liam J. McGuffin, Paweł Krupa, Bartłomiej Zaborowski, David Baker, Alexandre Defelicibus, Eshel Faraggi, Melis Onel, Johannes Söding, Tomasz K Wirecki, Jeff Flatten, Jianlin Cheng, Firas Khatib, Dong Xu, Silvia Crivelli, Stanisław Ołdziej, Saraswathi Vishveshwara, Debswapna Bhattacharya, Golon L, George A. Khoury, Harold A. Scheraga, Artur Giełdoń, Jaume Bacardit, Chapman N, Björn Wallner, Shokoufeh Mirzaei, Khan M, Magdalena J. Ślusarz, Tomer Sidi, Trieber N, Robert Ganzynkowicz
Publikováno v:
Scientific reports, vol 8, iss 1
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Scientific Reports
Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)
Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advanced the field but many
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea265f961e83f6d8e56d90a5eb07cede
https://escholarship.org/uc/item/5jp72387
https://escholarship.org/uc/item/5jp72387