Zobrazeno 1 - 10
of 54
pro vyhledávání: '"Tomas Vinar"'
Publikováno v:
Frontiers in Bioinformatics, Vol 4 (2024)
We generalize a problem of finding maximum-scoring segment sets, previously studied by Csűrös (IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2004, 1, 139–150), from sequences to graphs. Namely, given a vertex-weighted graph G
Externí odkaz:
https://doaj.org/article/0336da1d90dc4a41ab516f4d108ab586
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Identification of plasmids from sequencing data is an important and challenging problem related to antimicrobial resistance spread and other One-Health issues. We provide a new architecture for identifying plasmid contigs in fragmented genome assembl
Externí odkaz:
https://doaj.org/article/8eb508d1a23c4ed18ec5b9795241fa83
Autor:
Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-18 (2022)
Abstract Background The genomes of SARS-CoV-2 are classified into variants, some of which are monitored as variants of concern (e.g. the Delta variant B.1.617.2 or Omicron variant B.1.1.529). Proportions of these variants circulating in a human popul
Externí odkaz:
https://doaj.org/article/4d6e5715ac914ed79120dc987e8ddf00
Autor:
Kristína Boršová, Evan D. Paul, Viera Kováčová, Monika Radvánszka, Roman Hajdu, Viktória Čabanová, Monika Sláviková, Martina Ličková, Ľubomíra Lukáčiková, Andrej Belák, Lucia Roussier, Michaela Kostičová, Anna Líšková, Lucia Maďarová, Mária Štefkovičová, Lenka Reizigová, Elena Nováková, Peter Sabaka, Alena Koščálová, Broňa Brejová, Edita Staroňová, Matej Mišík, Tomáš Vinař, Jozef Nosek, Pavol Čekan, Boris Klempa
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Abstract The emergence of a novel SARS-CoV-2 B.1.1.7 variant sparked global alarm due to increased transmissibility, mortality, and uncertainty about vaccine efficacy, thus accelerating efforts to detect and track the variant. Current approaches to d
Externí odkaz:
https://doaj.org/article/a18a3490ece04f2e989ba15fb1e5e8d0
Autor:
Branislav Kovacech, Lubica Fialova, Peter Filipcik, Rostislav Skrabana, Monika Zilkova, Natalia Paulenka-Ivanovova, Andrej Kovac, Denisa Palova, Gabriela Paulikova Rolkova, Katarina Tomkova, Natalia Turic Csokova, Karina Markova, Michaela Skrabanova, Kristina Sinska, Neha Basheer, Petra Majerova, Jozef Hanes, Vojtech Parrak, Michal Prcina, Ondrej Cehlar, Martin Cente, Juraj Piestansky, Michal Fresser, Michal Novak, Monika Slavikova, Kristina Borsova, Viktoria Cabanova, Bronislava Brejova, Tomas Vinař, Jozef Nosek, Boris Klempa, Ludek Eyer, Vaclav Hönig, Martin Palus, Daniel Ruzek, Tereza Vyhlidalova, Petra Strakova, Blanka Mrazkova, Dagmar Zudova, Gizela Koubkova, Vendula Novosadova, Jan Prochazka, Radislav Sedlacek, Norbert Zilka, Eva Kontsekova
Publikováno v:
EBioMedicine, Vol 76, Iss , Pp 103818- (2022)
Summary: Background: The emergence of new SARS-CoV-2 variants of concern B.1.1.7 (Alpha), B.1.351 (Beta), P.1 (Gamma) and B.1.617.2 (Delta) that harbor mutations in the viral S protein raised concern about activity of current vaccines and therapeutic
Externí odkaz:
https://doaj.org/article/d503988bb92a4f8ca2f39b041da95550
Autor:
Broňa Brejová, Kristína Boršová, Viktória Hodorová, Viktória Čabanová, Askar Gafurov, Dominika Fričová, Martina Neboháčová, Tomáš Vinař, Boris Klempa, Jozef Nosek
Publikováno v:
PLoS ONE, Vol 16, Iss 10 (2021)
Surveillance of the SARS-CoV-2 variants including the quickly spreading mutants by rapid and near real-time sequencing of the viral genome provides an important tool for effective health policy decision making in the ongoing COVID-19 pandemic. Here w
Externí odkaz:
https://doaj.org/article/9d28bdf74f8f4d45a6155697dcadd81a
Autor:
Andrew D. Foote, Nagarjun Vijay, María C. Ávila-Arcos, Robin W. Baird, John W. Durban, Matteo Fumagalli, Richard A. Gibbs, M. Bradley Hanson, Thorfinn S. Korneliussen, Michael D. Martin, Kelly M. Robertson, Vitor C. Sousa, Filipe G. Vieira, Tomáš Vinař, Paul Wade, Kim C. Worley, Laurent Excoffier, Phillip A. Morin, M. Thomas P. Gilbert, Jochen B.W. Wolf
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-12 (2016)
Killer whales have evolved into specialized ecotypes based on hunting strategies and ecological niches. Here, Andrew Foote and colleagues sequenced the whole genome of individual killer whales representing 5 different ecotypes from North Pacific and
Externí odkaz:
https://doaj.org/article/36f7570dd8f147cf9f4f95199841fd26
Publikováno v:
PLoS ONE, Vol 12, Iss 6, p e0178751 (2017)
The MinION device by Oxford Nanopore produces very long reads (reads over 100 kBp were reported); however it suffers from high sequencing error rate. We present an open-source DNA base caller based on deep recurrent neural networks and show that the
Externí odkaz:
https://doaj.org/article/30da027872d9462aaaf3a84ff804e4ac
Autor:
Xin Ma, Joanna L Kelley, Kirsten Eilertson, Shaila Musharoff, Jeremiah D Degenhardt, André L Martins, Tomas Vinar, Carolin Kosiol, Adam Siepel, Ryan N Gutenkunst, Carlos D Bustamante
Publikováno v:
PLoS ONE, Vol 8, Iss 10, p e77175 (2013)
To gain insights into evolutionary forces that have shaped the history of Bornean and Sumatran populations of orang-utans, we compare patterns of variation across more than 11 million single nucleotide polymorphisms found by previous mitochondrial an
Externí odkaz:
https://doaj.org/article/7090b00f81ee43a8a09926ee1945932b
Autor:
Hana Lichancová, Jozef Nosek, Barbara Sivakova, Tomas Vinar, Viktória Hodorová, Bronislava Brejová, Renáta Tóth, Peter Barath, Toni Gabaldón, Filip Brázdovič, Martina Neboháčová, Lubomir Tomaska, R. Vrzonova, Attila Gácser, A. Mojakova, Igor Zeman, Andrea Cillingová, Z. Klepcova
Many fungal species utilize hydroxyderivatives of benzene and benzoic acid as carbon sources. The yeast Candida parapsilosis metabolizes these compounds via the 3-oxoadipate and gentisate pathways, whose components are encoded by two metabolic gene c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4391a15d68f2e76fda6f4150004faec9
https://doi.org/10.1101/2021.09.13.460007
https://doi.org/10.1101/2021.09.13.460007
