Zobrazeno 1 - 10
of 31
pro vyhledávání: '"Tom Oinn"'
Autor:
Andrew Gibson, Katy Wolstencroft, Carole Goble, Khalid Belhajjame, Tom Oinn, Paolo Missier, Matthew Gamble
Publikováno v:
Future Generation Computer Systems. 25:453-459
Workflows systems are steadily finding their way into the work practices of scientists. This is particularly true in the in silico science of bioinformatics, where biological data can be processed by Web Services. In this paper, we investigate the po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::904c7d790cb353a250861d89e2e49d03
https://doi.org/10.1016/j.future.2008.09.009
https://doi.org/10.1016/j.future.2008.09.009
Autor:
Abdelkrim Rachedi, Clifford E. Felder, Pedro M. Alzari, M. Ben Jelloul, Janet M. Thornton, Raymond Ripp, Bruno Canard, G. Whamond, Luc Moulinier, Joel L. Sussman, J.M. Diprose, Antonio Rosato, Kim Henrick, Olivier Poch, Robert Esnouf, I M Berry, Richard J. Morris, L. G. Carter, Shira Albeck, Jean-Claude Thierry, Anastassis Perrakis, Israel Silman, Tom Oinn, Hélène Malet, Ivano Bertini, Serge X. Cohen, Claudio Luchinat, Sonia Longhi, Yoav Peleg, Tamar Unger, François Ferron, Claudia Andreini, Jaime Prilusky, Orly Dym, Roman A. Laskowski, Lucia Banci, Christian Cambillau, Brendan Vaughan, Julia Watson, David I. Stuart, Wim F. Vranken, Julie D. Thompson, Rodrigo Lopez, Anne Pajon, F. Guillemot, T. Mochel, R. Hamer, Thomas Laurent
Publikováno v:
Acta Crystallographica Section D: Biological Crystallography
Acta Crystallographica Section D: Biological Crystallography, International Union of Crystallography, 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩
Acta crystallographica Section D : Structural biology [1993-...]
Acta crystallographica Section D : Structural biology [1993-..], 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩
Acta Crystallographica Section D: Biological Crystallography, International Union of Crystallography, 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩
Acta crystallographica Section D : Structural biology [1993-...]
Acta crystallographica Section D : Structural biology [1993-..], 2006, 62 (Pt 10), pp.1184-95. ⟨10.1107/S090744490602991X⟩
International audience; SPINE (Structural Proteomics In Europe) was established in 2002 as an integrated research project to develop new methods and technologies for high-throughput structural biology. Development areas were broken down into workpack
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c33d0d111c60f8bd831fc1a8ee79e312
https://doi.org/10.1107/s090744490602991x
https://doi.org/10.1107/s090744490602991x
Autor:
R. Mark Greenwood, Duncan Hull, Carole Goble, Matthew Pocock, Anil Wipat, Justin Ferris, Antoon Goderis, Matthew Addis, Phillip Lord, Martin Senger, M. Nedim Alpdemir, Darren Marvin, Robert Stevens, Tom Oinn, Kevin Glover, Chris Wroe, Peter Li
Publikováno v:
Concurrency and Computation: Practice and Experience. 18:1067-1100
Life sciences research is based on individuals, often with diverse skills, assembled into research groups. These groups use their specialist expertise to address scientific problems. The in silico experiments undertaken by these research groups can b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7555056c55871b635c4a62cb18d8a2f
https://doi.org/10.1002/cpe.993
https://doi.org/10.1002/cpe.993
Autor:
Peter Li, Anil Wipat, Matthew Addis, Mark Greenwood, Tom Oinn, Martin Senger, Matthew Pocock, Tim Carver, Justin Ferris, Kevin Glover, Darren Marvin
Publikováno v:
Bioinformatics. 20:3045-3054
Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these resources are being made available with programmatic access in the form of Web services. B
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78bd347e4fd4196fa589ef18185b1ab5
https://doi.org/10.1093/bioinformatics/bth361
https://doi.org/10.1093/bioinformatics/bth361
The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
Autor:
Michele Magrane, Tom Oinn, Paul J. Kersey, David Binns, Evelyn Camon, Daniel Barrell, Nicola Mulder, Wolfgang Fleischmann, Anthony J. Cox, Rolf Apweiler, John Maslen
Publikováno v:
Genome Research. 13:662-672
Gene Ontology Annotation (GOA) is a project run by the European Bioinformatics Institute (EBI) that aims to provide assignments of terms from the Gene Ontology (GO) resource to gene products in a number of its databases (http://www.ebi.ac.uk/GOA). In
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56297e707e4d0171cae6ba22677bcd80
https://doi.org/10.1101/gr.461403
https://doi.org/10.1101/gr.461403
Autor:
Tom Oinn
Publikováno v:
ISMB (Supplement of Bioinformatics)
In order to make use of the emerging grid and network services offered by various institutes and mandated by many current research projects, some kind of user accessible client is required. In contrast with attempts to build generic workbenches, Tali
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::04703d2d70e061d30e87c0376695a0a9
https://doi.org/10.1093/bioinformatics/btg1028
https://doi.org/10.1093/bioinformatics/btg1028
Autor:
Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Wei Tan, Alexandra Nenadic, Ian Dunlop, Alan Williams, Tom Oinn, Carole Goble
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642138171
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7504c814929ec6497777f757b7ed5b5a
https://doi.org/10.1007/978-3-642-13818-8_33
https://doi.org/10.1007/978-3-642-13818-8_33
Autor:
Keiichiro Ono, Raoul J. P. Bonnal, Lukasz Salwinski, Kazuharu Arakawa, Shinobu Okamoto, Daron M. Standley, Rene Ranzinger, Hiroyuki Nakamura, Richard Bruskiewich, Jan Christian Bryne, Toshihisa Takagi, Richard Holland, Chikashi Nobata, Michael Kuhn, Florian Reisinger, Paul M. K. Gordon, Stuart Owen, Yasukazu Nakamura, Yoshinobu Kano, Pjotr Prins, Tamotsu Noguchi, Toshiyuki Tashiro, Arnaud Kerhornou, Yasunori Yamamoto, Heikki Lehväslaiho, Tom Oinn, Oswaldo Trelles, Andreas Groscurth, Hilmar Lapp, Christian M. Zmasek, Martin Senger, Akira Funahashi, Rutger A. Vos, Shuichi Kawashima, Lord H. Barboza, Kiyoshi Asai, William S. York, Edward A. Kawas, Atsuko Yamaguchi, Bruno Aranda, Tatsuya Nishizawa, Alex Gutteridge, Mark Wilkinson, José M. Fernández, Kiyoko F. Aoki-Kinoshita, Jan Aerts, Naohisa Goto, Yasumasa Shigemoto, Matthew Pocock, Akira R. Kinjo, Mark Schreiber, Evangelos Pafilis, Hideaki Sugawara, Toshiaki Katayama, Eri Kibukawa, Hong-Woo Chun, Mitsuteru Nakao
Publikováno v:
Journal of Biomedical Semantics, 1
Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; et al.(2010). The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics, 1(1), 8. doi: http://dx.doi.org/10.1186/2041-1480-1-8. Retrieved from: http://www.escholarship.org/uc/item/6v60h2hh
Journal of Biomedical Semantics 1 (2010)
Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; et al.(2010). The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Journal of Biomedical Semantics, 1(1), 8. doi: http://dx.doi.org/10.1186/2041-1480-1-8. Retrieved from: http://www.escholarship.org/uc/item/6v60h2hh
Journal of Biomedical Semantics 1 (2010)
Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire datab
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0134a8494989978db4664c9e3670d2e5
https://doi.org/10.1186/2041-1480-1-8
https://doi.org/10.1186/2041-1480-1-8
Autor:
Khalid Belhajjame, Carole Goble, Oscar Corcho, Franck Tanoh, Tom Oinn, Katy Wolstencroft, A. William
Publikováno v:
Proceedings of the 8th International Symposium on Cluster Computing and the Grid, CCGRID2008. 3rd International Workshop on Workflow Systems in e-Science, WSES 2008 | 3rd International Workshop on Workflow Systems in e-Science, WSES 2008 | 19/05/2008-22/05/2008 | Lyon, France
Archivo Digital UPM
Universidad Politécnica de Madrid
CCGRID
Archivo Digital UPM
Universidad Politécnica de Madrid
CCGRID
There seems to be a general consensus on the crucial role metadata can play for enhancing the functionalities of scientific workflows systems, e.g., workflow and service discovery, composition and provenance browsing, among others. However, in most c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ca8b6288e5fe0f984e8e60621a39589
http://oa.upm.es/2631/
http://oa.upm.es/2631/
Autor:
Tom Oinn, Anders Lanzén
Publikováno v:
Bioinformatics (Oxford, England). 24(8)
Summary: Taverna is an application that eases the integration of tools and databases for life science research by the construction of workflows. The Taverna Interaction Service extends the functionality of Taverna by defining human interaction within
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57232c12b7eaa625585e3e6d1ea9c60e
https://pubmed.ncbi.nlm.nih.gov/18337261
https://pubmed.ncbi.nlm.nih.gov/18337261