Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Tomáš Flouri"'
Autor:
Alexandros Vasilikopoulos, Bernhard Misof, Karen Meusemann, Doria Lieberz, Tomáš Flouri, Rolf G. Beutel, Oliver Niehuis, Torsten Wappler, Jes Rust, Ralph S. Peters, Alexander Donath, Lars Podsiadlowski, Christoph Mayer, Daniela Bartel, Alexander Böhm, Shanlin Liu, Paschalia Kapli, Carola Greve, James E. Jepson, Xingyue Liu, Xin Zhou, Horst Aspöck, Ulrike Aspöck
Publikováno v:
BMC Evolutionary Biology, Vol 20, Iss 1, Pp 1-24 (2020)
Abstract Background The latest advancements in DNA sequencing technologies have facilitated the resolution of the phylogeny of insects, yet parts of the tree of Holometabola remain unresolved. The phylogeny of Neuropterida has been extensively studie
Externí odkaz:
https://doaj.org/article/b698f9905a7341cb8ad9c4f63228ee1f
Autor:
Alexandros Vasilikopoulos, Bernhard Misof, Karen Meusemann, Doria Lieberz, Tomáš Flouri, Rolf G. Beutel, Oliver Niehuis, Torsten Wappler, Jes Rust, Ralph S. Peters, Alexander Donath, Lars Podsiadlowski, Christoph Mayer, Daniela Bartel, Alexander Böhm, Shanlin Liu, Paschalia Kapli, Carola Greve, James E. Jepson, Xingyue Liu, Xin Zhou, Horst Aspöck, Ulrike Aspöck
Publikováno v:
BMC Evolutionary Biology, Vol 20, Iss 1, Pp 1-3 (2020)
An amendment to this paper has been published and can be accessed via the original article.
Externí odkaz:
https://doaj.org/article/95d891164b6d46d6bea4d78c8e982683
Autor:
Diep Thi Hoang, Le Sy Vinh, Tomáš Flouri, Alexandros Stamatakis, Arndt von Haeseler, Bui Quang Minh
Publikováno v:
BMC Evolutionary Biology, Vol 18, Iss 1, Pp 1-11 (2018)
Abstract Background The nonparametric bootstrap is widely used to measure the branch support of phylogenetic trees. However, bootstrapping is computationally expensive and remains a bottleneck in phylogenetic analyses. Recently, an ultrafast bootstra
Externí odkaz:
https://doaj.org/article/d9852376e688479a8dfc04becf7505e6
Publikováno v:
PeerJ, Vol 4, p e2584 (2016)
Background VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to the widely used USEARCH tool (
Externí odkaz:
https://doaj.org/article/c6afe7dddd824879a8d6f6c853df9c22
Autor:
George P Tiley, Tomáš Flouri, Xiyun Jiao, Jelmer W Poelstra, Bo Xu, Tianqi Zhu, Bruce Rannala, Anne D Yoder, Ziheng Yang
Publikováno v:
Systematic Biology.
Cross-species introgression can have significant impacts on phylogenomic reconstruction of species divergence events. Here, we used simulations to show how the presence of even a small amount of introgression can bias divergence time estimates when g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2a3c9c1eeb3214d00282b1180d2e718a
https://doi.org/10.1093/sysbio/syad015
https://doi.org/10.1093/sysbio/syad015
Publikováno v:
Molecular biology and evolution. 39(12)
Genomic sequence data provide a rich source of information about the history of species divergence and interspecific hybridization or introgression. Despite recent advances in genomics and statistical methods, it remains challenging to infer gene flo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ed18a9cac2c8e63df72318990a3d5d1
https://pubmed.ncbi.nlm.nih.gov/36317198
https://pubmed.ncbi.nlm.nih.gov/36317198
Publikováno v:
Molecular biology and evolution, vol 39, iss 8
The multispecies coalescent (MSC) model accommodates both species divergences and within-species coalescent and provides a natural framework for phylogenetic analysis of genomic data when the gene trees vary across the genome. The MSC model implement
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd51deb5760074f32189908e98f55b60
https://pubmed.ncbi.nlm.nih.gov/36477270
https://pubmed.ncbi.nlm.nih.gov/36477270
Publikováno v:
Molecular ecology. 31(10)
Phylogenomic analyses under the multispecies coalescent model assume no recombination within locus and free recombination among loci. Yet, in real data sets intralocus recombination causes different sites of the same locus to have different genealogi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b194552c001794741efe27ef0a0d371
https://pubmed.ncbi.nlm.nih.gov/35313033
https://pubmed.ncbi.nlm.nih.gov/35313033
Autor:
Vasilikopoulos, Alexandros, Misof, Bernhard, Meusemann, Karen, Lieberz, Doria, Tomáš Flouri, Beutel, Rolf G., Niehuis, Oliver, Wappler, Torsten, Rust, Jes, Peters, Ralph S., Donath, Alexander, Podsiadlowski, Lars, Mayer, Christoph, Bartel, Daniela, Böhm, Alexander, Shanlin Liu, Paschalia Kapli, Greve, Carola, Jepson, James E., Xingyue Liu, Zhou, Xin, Aspöck, Horst, Aspöck, Ulrike
Additional file 3: Supplementary Figures S1–S56. The supplementary figures include: 1) all phylogenetic trees inferred from the analyses of different datasets and tree-inference methods, 2) results of additional ACSR analyses under different parame
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::105ba3721b87af116903690722760dae
Autor:
Vasilikopoulos, Alexandros, Misof, Bernhard, Meusemann, Karen, Lieberz, Doria, Tomáš Flouri, Beutel, Rolf G., Niehuis, Oliver, Wappler, Torsten, Rust, Jes, Peters, Ralph S., Donath, Alexander, Podsiadlowski, Lars, Mayer, Christoph, Bartel, Daniela, Böhm, Alexander, Shanlin Liu, Paschalia Kapli, Greve, Carola, Jepson, James E., Xingyue Liu, Zhou, Xin, Aspöck, Horst, Aspöck, Ulrike
Additional file 3: Supplementary Figures S1–S56. The supplementary figures include: 1) all phylogenetic trees inferred from the analyses of different datasets and tree-inference methods, 2) results of additional ACSR analyses under different parame
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1006471db5b843feca82ee7a997f02f1