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Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Autor: Hladish TJ; Department of Biology, University of Florida, Gainesville, Florida, United States of America.; Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America., Pillai AN; Department of Biology, University of Florida, Gainesville, Florida, United States of America., Pearson CAB; Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom.; South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa., Toh KB; Department of Biology, University of Florida, Gainesville, Florida, United States of America.; Institute of Global Health and Department of Preventive Medicine Northwestern University, Chicago, Illinois, United States of America., Tamayo AC; Department of Biology, University of Florida, Gainesville, Florida, United States of America., Stoltzfus A; Office of Data and Informatics, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America., Longini IM; Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America.; Department of Biostatistics, University of Florida, Gainesville, Florida, United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2024 May 31; Vol. 20 (5), pp. e1012128. Date of Electronic Publication: 2024 May 31 (Print Publication: 2024).

Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub .

Autor: Howerton E; The Pennsylvania State University (PSU))., Contamin L; University of Pittsburgh., Mullany LC; Johns Hopkins University Applied Physics Lab (JHU/APL)., Qin M; Harvard University., Reich NG; University of Massachusetts Amherst., Bents S; National Institutes of Health Fogarty International Center (NIH)., Borchering RK; PSU, Centers for Disease Control and Prevention (CDC)., Jung SM; University of North Carolina (UNC)., Loo SL; Johns Hopkins University Infectious Disease Dynamics (JHU-IDD)., Smith CP; Johns Hopkins University Infectious Disease Dynamics (JHU-IDD)., Levander J; University of Pittsburgh (UPitt)., Kerr J; UPitt., Espino J; UPitt., van Panhuis WG; National Institute of Allergy and Infectious Diseases., Hochheiser H; UPitt., Galanti M; Columbia University (CU)., Yamana T; CU., Pei S; CU., Shaman J; CU., Rainwater-Lovett K; JHU/APL., Kinsey M; JHU/APL., Tallaksen K; JHU/APL., Wilson S; JHU/APL., Shin L; JHU/APL., Lemaitre JC; UNC., Kaminsky J; JHU-IDD., Hulse JD; JHU-IDD., Lee EC; JHU-IDD., McKee C; JHU-IDD., Hill A; JHU-IDD., Karlen D; University of Victoria (UVic)., Chinazzi M; Northeastern University (NEU)., Davis JT; NEU., Mu K; NEU., Xiong X; NEU., Piontti APY; NEU., Vespignani A; NEU., Rosenstrom ET; North Carolina State University (NCSU)., Ivy JS; NCSU., Mayorga ME; NCSU., Swann JL; NCSU., España G; University of Notre Dame (UND)., Cavany S; UND., Moore S; UND., Perkins A; UND., Hladish T; University of Florida (UF)., Pillai A; UF., Toh KB; Northwestern University., Longini I Jr; UF., Chen S; University of North Carolina at Charlotte (UNCC)., Paul R; UNCC., Janies D; UNCC., Thill JC; UNCC., Bouchnita A; University of Texas at El Paso (UTEP)., Bi K; University of Texas at Austin (UTA)., Lachmann M; Santa Fe Institute (SFI)., Fox S; University of Georgia (UGA)., Meyers LA; UTA., Srivastava A; University of Southern California., Porebski P; University of Virginia (UVA)., Venkatramanan S; UVA., Adiga A; UVA., Lewis B; UVA., Klahn B; UVA., Outten J; UVA., Hurt B; UVA., Chen J; UVA., Mortveit H; UVA., Wilson A; UVA., Marathe M; UVA., Hoops S; UVA., Bhattacharya P; UVA., Machi D; UVA., Cadwell BL; CDC., Healy JM; CDC., Slayton RB; CDC., Johansson MA; CDC., Biggerstaff M; CDC., Truelove S; JHU-IDD., Runge MC; U.S. Geological Survey., Shea K; PSU., Viboud C; NIH., Lessler J; UNC.

Publikováno v: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Jul 03. Date of Electronic Publication: 2023 Jul 03.

Multiple models for outbreak decision support in the face of uncertainty.

Autor: Shea K; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Borchering RK; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Probert WJM; Nuffield Department of Medicine, Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford OX3 7LF, United Kingdom., Howerton E; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Bogich TL; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Li SL; State Key Laboratory of Grassland Agro-ecosystems, Center for Grassland Microbiome, and College of Pastoral, Agriculture Science and Technology, Lanzhou University, Lanzhou, 73000, People's Republic of China., van Panhuis WG; Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15260., Viboud C; Fogarty International Center, National Institutes of Health, Bethesda, MD 20892., Aguás R; Nuffield Department of Medicine, Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford OX3 7LF, United Kingdom., Belov AA; Office of Biostatistics and Pharmacovigilance, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, MD 20993., Bhargava SH; Department of Biology, University of Florida, Gainesville, FL 32611., Cavany SM; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556., Chang JC; Epidemiology and Biostatistics Section, Rehabilitation Medicine, Clinical Center, National Institutes of Health, Bethesda, MD 20892.; Mederrata Research Inc, Columbus, OH 43212., Chen C; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195., Chen J; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., Chen S; Department of Public Health Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223.; School of Data Science, University of North Carolina at Charlotte, Charlotte, NC 28223., Chen Y; Mechatronics, Embedded Systems and Automation Laboratory, School of Engineering, University of California, Merced, CA 95343., Childs LM; Department of Mathematics, Virginia Tech, Blacksburg, VA 24061., Chow CC; Mathematical Biology Section, Laboratory of Biological Modeling, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892., Crooker I; Los Alamos National Laboratory, Los Alamos, NM 87545., Del Valle SY; Los Alamos National Laboratory, Los Alamos, NM 87545., España G; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556., Fairchild G; Los Alamos National Laboratory, Los Alamos, NM 87545., Gerkin RC; School of Life Sciences, Arizona State University, Tempe, AZ 85287., Germann TC; Los Alamos National Laboratory, Los Alamos, NM 87545., Gu Q; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., Guan X; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195., Guo L; School of Mathematics, Jilin University, Changchun, Jilin 130012, People's Republic of China., Hart GR; Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, WA 98109., Hladish TJ; Department of Biology, University of Florida, Gainesville, FL 32611.; Emerging Pathogens Institute, University of Florida, Gainesville, FL 32610., Hupert N; Department of Population Health Sciences, Division of Epidemiology, Weill Cornell Medicine, Cornell University, New York, NY 10065., Janies D; Computational Intelligence to Predict Health and Environmental Risks, University of North Carolina at Charlotte, Charlotte, NC 28223., Kerr CC; Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, WA 98109., Klein DJ; Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, WA 98109., Klein EY; Department of Emergency Medicine, Johns Hopkins University, Baltimore, MD 21209.; One Health Trust, Washington, DC 20015., Lin G; Department of Emergency Medicine, Johns Hopkins University, Baltimore, MD 21209.; One Health Trust, Washington, DC 20015., Manore C; Los Alamos National Laboratory, Los Alamos, NM 87545., Meyers LA; Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712., Mittler JE; Department of Microbiology, School of Medicine, University of Washington, Seattle, WA 98195., Mu K; Laboratory for the Modeling of Biological and Socio-technical Systems, Network Science Institute, Northeastern University, Boston, MA 02115., Núñez RC; Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, WA 98109., Oidtman RJ; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556., Pasco R; Operations Research and Industrial Engineering, The University of Texas at Austin, Austin, TX 78712., Pastore Y Piontti A; Laboratory for the Modeling of Biological and Socio-technical Systems, Network Science Institute, Northeastern University, Boston, MA 02115., Paul R; Department of Public Health Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223., Pearson CAB; Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London WC1E 7HT, United Kingdom.; Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, United Kingdom.; South African Department of Science and Innovation - National Research Foundation Centre of Excellence in Epidemiological Modelling and Analysis, Stellenbosch University, Stellenbosch, 7600 South Africa., Perdomo DR; Department of Biology, University of Florida, Gainesville, FL 32611., Perkins TA; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556., Pierce K; Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX 78712., Pillai AN; Department of Biology, University of Florida, Gainesville, FL 32611., Rael RC; Los Alamos National Laboratory, Los Alamos, NM 87545., Rosenfeld K; Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, WA 98109., Ross CW; Los Alamos National Laboratory, Los Alamos, NM 87545., Spencer JA; Los Alamos National Laboratory, Los Alamos, NM 87545., Stoltzfus AB; National Institute of Standards and Technology, Gaithersburg, MD 20899., Toh KB; School of Natural Resources and Environment, University of Florida, Gainesville, FL 32611., Vattikuti S; Mathematical Biology Section, Laboratory of Biological Modeling, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892., Vespignani A; Laboratory for the Modeling of Biological and Socio-technical Systems, Network Science Institute, Northeastern University, Boston, MA 02115., Wang L; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., White LJ; Nuffield Department of Medicine, Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford OX3 7LF, United Kingdom., Xu P; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., Yang Y; One Health Trust, Washington, DC 20015., Yogurtcu ON; Office of Biostatistics and Pharmacovigilance, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, MD 20993., Zhang W; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., Zhao Y; The 28th Research Institute of China Technology Group Corporation, Nanjing, Jiangsu 210023, People's Republic of China., Zou D; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA 90095., Ferrari MJ; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Pannell D; School of Agriculture and Environment, University of Western Australia, Perth, WA 6009, Australia., Tildesley MJ; Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research, School of Life Sciences and Mathematics Institute, University of Warwick, Coventry, CV4 7AL, United Kingdom., Seifarth J; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Johnson E; Department of Biology, The Pennsylvania State University, University Park, PA 16802.; Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA 16802., Biggerstaff M; Centers for Disease Control and Prevention COVID-19 Response, Atlanta, GA 30329., Johansson MA; Centers for Disease Control and Prevention COVID-19 Response, Atlanta, GA 30329., Slayton RB; Centers for Disease Control and Prevention COVID-19 Response, Atlanta, GA 30329., Levander JD; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, PA 15260., Stazer J; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, PA 15260., Kerr J; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, PA 15260., Runge MC; U.S. Geological Survey, Eastern Ecological Science Center, Laurel, MD 20708.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2023 May 02; Vol. 120 (18), pp. e2207537120. Date of Electronic Publication: 2023 Apr 25.

Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.

Autor: Hladish TJ; Department of Biology, University of Florida, Gainesville, Florida, USA.; Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA., Pillai AN; Department of Biology, University of Florida, Gainesville, Florida, USA., Pearson CAB; Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, UK.; South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, RSA., Toh KB; Department of Biology, University of Florida, Gainesville, Florida, USA.; Institute of Global Health and Department of Preventive Medicine Northwestern University, Chicago, IL, USA., Tamayo A; Department of Biology, University of Florida, Gainesville, Florida, USA., Stoltzfus A; Office of Data and Informatics, National Institute of Standards and Technology, Gaithersburg, MD, USA., Longini IM Jr; Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA.; Department of Biostatistics, University of Florida, Gainesville, Florida, USA.

Publikováno v: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Mar 10. Date of Electronic Publication: 2023 Mar 10.