Zobrazeno 1 - 5
of 5
pro vyhledávání: '"Todd J. Dolinsky"'
Autor:
Robert Konecny, David Ryan Koes, Nathan A. Baker, Jens Erik Nielsen, Dave Engel, Kyle E. Monson, Robert Krasny, Peter Li, Lisa E. Felberg, Karina Liles, Juan Brandi, David H. Brookes, J. Andrew McCammon, Guo-Wei Wei, Leighton Wilson, Minju Chun, Michael Holst, Elizabeth Jurrus, Todd J. Dolinsky, Teresa Head-Gordon, Weihua Geng, Keith T. Star, Jiahui Chen, David W. Gohara
Publikováno v:
Protein science : a publication of the Protein Society, vol 27, iss 1
Jurrus, E; Engel, D; Star, K; Monson, K; Brandi, J; Felberg, LE; et al.(2018). Improvements to the APBS biomolecular solvation software suite. Protein Science, 27(1), 112-128. doi: 10.1002/pro.3280. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/3cg341d5
Jurrus, E; Engel, D; Star, K; Monson, K; Brandi, J; Felberg, LE; et al.(2018). Improvements to the APBS biomolecular solvation software suite. Protein Science, 27(1), 112-128. doi: 10.1002/pro.3280. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/3cg341d5
© 2017 The Protein Society The Adaptive Poisson–Boltzmann Solver (APBS) software was developed to solve the equations of continuum electrostatics for large biomolecular assemblages that have provided impact in the study of a broad range of chemica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6bc0647139a37cb36f141e1a3b52dbce
https://escholarship.org/uc/item/3cg341d5
https://escholarship.org/uc/item/3cg341d5
Autor:
Hui Li, Gerhard Klebe, Paul Czodrowski, Jan H. Jensen, Todd J. Dolinsky, Nathan A. Baker, Jens Erik Nielsen
Publikováno v:
Nucleic Acids Research
Real-world observable physical and chemical characteristics are increasingly being calculated from the 3D structures of biomolecules. Methods for calculating pK(a) values, binding constants of ligands, and changes in protein stability are readily ava
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca643c6eb64d461ac549f63446f13081
https://pubmed.ncbi.nlm.nih.gov/17488841
https://pubmed.ncbi.nlm.nih.gov/17488841
Autor:
Jens E. Nielsen, Chandrajit L. Bajaj, Xiaoyu Zhang, Todd J. Dolinsky, Nathan A. Baker, Bong June Kwon
In this paper we present a method for the multi-resolution comparison of biomolecular electrostatic potentials without the need for global structural alignment of the biomolecules. The underlying computational geometry algorithm uses multi-resolution
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::273db3b49ef24bfc044b518645ce0e71
https://europepmc.org/articles/PMC2561295/
https://europepmc.org/articles/PMC2561295/
Continuum solvation models, such as Poisson–Boltzmann and Generalized Born methods, have become increasingly popular tools for investigating the influence of electrostatics on biomolecular structure, energetics and dynamics. However, the use of suc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d3eebdef4f0943a23e577a5d2ef7c34
https://europepmc.org/articles/PMC441519/
https://europepmc.org/articles/PMC441519/
Publikováno v:
Bioinformatics (Oxford, England). 20(14)
Summary: SPrCY is a web-accessible database which provides comparison of structure prediction results for the Saccharomyces cerevisiae genome. This web service offers the ability to search, analyze and compare the yeast structural predictions from se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78f5eacd395757fe7db66a7c9b4c25f3
https://pubmed.ncbi.nlm.nih.gov/15059824
https://pubmed.ncbi.nlm.nih.gov/15059824