Modeling wildfire using evolutionary cellular automata

Autor: Karl Wd. Kaiser, Todd DeLuca, Maxfield E. Green

Publikováno v: GECCO

With the increased size and frequency of wildfire events worldwide, accurate real-time prediction of evolving wildfire fronts is a crucial component of firefighting efforts and forest management practices. We propose a cellular automaton (CA) that si

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::1908e9f249f37507f1c225e4c34ce7d4
https://doi.org/10.1145/3377930.3389836

Standardized benchmarking in the quest for orthologs

Autor: Leszek P. Pryszcz, Peer Bork, Adrian M. Altenhoff, Kimmen Sjölander, Toni Gabaldón, Christian von Mering, Odile Lecompte, Todd DeLuca, Clément-Marie Train, Maria Jesus Martin, Brigitte Boeckmann, Cécile Pereira, Kristoffer Forslund, Matthieu Muffato, Christophe Dessimoz, Suzanna E. Lewis, Salvador Capella-Gutierrez, Erik L. L. Sonnhammer, Paul Thomas, Benjamin Linard, Jaime Huerta-Cepas, Fabian Schreiber, Damian Szklarczyk, Ioannis Xenarios, Alan Wilter Sousa da Silva, Lars Juhl Jensen, Daniel A. Dalquen

Publikováno v: Altenhoff, A M, Boeckmann, B, Capella-Gutierrez, S, Dalquen, D A, DeLuca, T, Forslund, K, Huerta-Cepas, J, Linard, B, Pereira, C, Pryszcz, L P, Schreiber, F, da Silva, A S, Szklarczyk, D, Train, C-M, Bork, P, Lecompte, O, von Mering, C, Xenarios, I, Sjölander, K, Jensen, L J, Martin, M J, Muffato, M, Gabaldón, T, Lewis, S E, Thomas, P D, Sonnhammer, E, Dessimoz, C & Quest for Orthologs consortium 2016, ' Standardized benchmarking in the quest for orthologs ', Nature Methods, vol. 13, pp. 425-30 . https://doi.org/10.1038/nmeth.3830
Nature Methods
Nature Methods, Nature Publishing Group, 2016, 13 (5), pp.425-430. ⟨10.1038/nMeth.3830⟩
Nature Methods, 13 (5)
Altenhoff, AM; Boeckmann, B; Capella-Gutierrez, S; Dalquen, DA; DeLuca, T; Forslund, K; et al.(2016). Standardized benchmarking in the quest for orthologs. Nature Methods, 13(5), 425-430. doi: 10.1038/nmeth.3830. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/59r1v5ts
Nature Methods, 2016, 13 (5), pp.425-430. ⟨10.1038/nMeth.3830⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature methods

Achieving high accuracy in orthology inference is essential for many comparative, evolutionary and functional genomic analyses, yet the true evolutionary history of genes is generally unknown and orthologs are used for very different applications acr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60866a263954de38b31c376023291243
https://curis.ku.dk/ws/files/187625712/nmeth.3830.pdf

Cost-Effective Cloud Computing: A Case Study Using the Comparative Genomics Tool, Roundup

Autor: Parul Kudtarkar, Peter J. Tonellato, Todd DeLuca, Vincent A. Fusaro, Dennis P. Wall

Publikováno v: Evolutionary Bioinformatics, Vol 2010, Iss 6, Pp 197-203 (2010)
Evolutionary Bioinformatics
Evolutionary Bioinformatics, Vol 6 (2010)

Background Comparative genomics resources, such as ortholog detection tools and repositories are rapidly increasing in scale and complexity. Cloud computing is an emerging technological paradigm that enables researchers to dynamically build a dedicat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd199fdd804d8219fa9667c15e0e9537
http://www.la-press.com/cost-effective-cloud-computing-a-case-study-using-the-comparative-geno-a2422

Roundup 2.0: enabling comparative genomics for over 1800 genomes

Autor: Kristian Che St. Gabriel, Todd DeLuca, Dennis P. Wall, Jike Cui, Jae-Yoon Jung

Publikováno v: Bioinformatics

Summary: Roundup is an online database of gene orthologs for over 1800 genomes, including 226 Eukaryota, 1447 Bacteria, 113 Archaea and 21 Viruses. Orthologs are inferred using the Reciprocal Smallest Distance algorithm. Users may query Roundup for s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b67d3bf7e59f8805bac21e4c2c958474
https://pubmed.ncbi.nlm.nih.gov/22247275

Use of artificial intelligence to shorten the behavioral diagnosis of autism

Autor: Dennis P. Wall, Rebecca Dally, Todd DeLuca, Rhiannon J. Luyster, Jae-Yoon Jung

Publikováno v: PLoS ONE
PLoS ONE, Vol 7, Iss 8, p e43855 (2012)

The Autism Diagnostic Interview-Revised (ADI-R) is one of the most commonly used instruments for assisting in the behavioral diagnosis of autism. The exam consists of 93 questions that must be answered by a care provider within a focused session that

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::80b02847967372164b986f7916809ce5
https://pubmed.ncbi.nlm.nih.gov/22952789