Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Tobias Zehnder"'
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-12 (2019)
Abstract Background Eukaryotic gene regulation is a complex process comprising the dynamic interaction of enhancers and promoters in order to activate gene expression. In recent years, research in regulatory genomics has contributed to a better under
Externí odkaz:
https://doaj.org/article/485b1df9f49a486f847fe8343b0d5140
Publikováno v:
Materials, Vol 9, Iss 11, p 887 (2016)
Hydrogel optimisation for biofabrication considering shape stability/mechanical properties and cell response is challenging. One approach to tackle this issue is to combine different additive manufacturing techniques, e.g., hot-melt extruded thermopl
Externí odkaz:
https://doaj.org/article/526399f1d6c64e07a49ab304cc4a3dc4
Autor:
Damir Baranasic, Matthias Hörtenhuber, Piotr J. Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Várnai, Yavor Hadzhiev, Ada Jimenez-Gonzalez, Nan Li, Joseph Wragg, Fabio M. D’Orazio, Dorde Relic, Mikhail Pachkov, Noelia Díaz, Benjamín Hernández-Rodríguez, Zelin Chen, Marcus Stoiber, Michaël Dong, Irene Stevens, Samuel E. Ross, Anne Eagle, Ryan Martin, Oluwapelumi Obasaju, Sepand Rastegar, Alison C. McGarvey, Wolfgang Kopp, Emily Chambers, Dennis Wang, Hyejeong R. Kim, Rafael D. Acemel, Silvia Naranjo, Maciej Łapiński, Vanessa Chong, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carninci, Uwe Ohler, Scott Allen Lacadie, Shawn M. Burgess, Cecilia Winata, Freek van Eeden, Juan M. Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Erik van Nimwegen, Monte Westerfield, Fiona C. Wardle, Carsten O. Daub, Boris Lenhard, Ferenc Müller
Publikováno v:
Baranasic, D, Hörtenhuber, M, Balwierz, P J, Zehnder, T, Mukarram, A K, Nepal, C, Várnai, C, Hadzhiev, Y, Jimenez-Gonzalez, A, Li, N, Wragg, J, D’Orazio, F M, Relic, D, Pachkov, M, Díaz, N, Hernández-Rodríguez, B, Chen, Z, Stoiber, M, Dong, M, Stevens, I, Ross, S E, Eagle, A, Martin, R, Obasaju, O, Rastegar, S, McGarvey, A C, Kopp, W, Chambers, E, Wang, D, Kim, H R, Acemel, R D, Naranjo, S, Łapiński, M, Chong, V, Mathavan, S, Peers, B, Sauka-Spengler, T, Vingron, M, Carninci, P, Ohler, U, Lacadie, S A, Burgess, S M, Winata, C, van Eeden, F, Vaquerizas, J M, Gómez-Skarmeta, J L, Onichtchouk, D, Brown, B J, Bogdanovic, O, van Nimwegen, E, Westerfield, M, Wardle, F C, Daub, C O, Lenhard, B & Müller, F 2022, ' Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements ', Nature Genetics, vol. 54, no. 7, pp. 1037-1050 . https://doi.org/10.1038/s41588-022-01089-w
Nature Genetics, 54, 1037–1050
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature Genetics, 54, 1037–1050
Digital.CSIC. Repositorio Institucional del CSIC
instname
14 pages, 8 figures, supplementary information https://doi.org/10.1038/s41588-022-01089-w.-- Data availability: Raw and aligned sequencing data are available at https://danio-code.zfin.org/dataExport/. The raw sequencing data produced for this study
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a5c9b0ff730aa047c825365d177a9878
https://edoc.unibas.ch/89500/
https://edoc.unibas.ch/89500/
Autor:
Caren M. Pauler, Tobias Zehnder, Markus Staudinger, Andreas Lüscher, Michael Kreuzer, Joël Berard, Manuel K. Schneider
Publikováno v:
Journal of Applied Ecology, 59 (5)
1. Green alder shrubs Alnus viridis increasingly overgrow European mountain pastures but hinder natural forest succession. This nitrogen-fixing, autochthonous invasive species has numerous negative effects including the loss of biodiversity and lands
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ac8d102d3a6f3fd4012ebf36ca6378c
Autor:
Alessa R. Ringel, Quentin Szabo, Andrea M. Chiariello, Konrad Chudzik, Robert Schöpflin, Patricia Rothe, Alexandra L. Mattei, Tobias Zehnder, Dermot Harnett, Verena Laupert, Simona Bianco, Sara Hetzel, Juliane Glaser, Mai H.Q. Phan, Magdalena Schindler, Daniel M. Ibrahim, Christina Paliou, Andrea Esposito, Cesar A. Prada-Medina, Stefan A. Haas, Peter Giere, Martin Vingron, Lars Wittler, Alexander Meissner, Mario Nicodemi, Giacomo Cavalli, Frédéric Bantignies, Stefan Mundlos, Michael I. Robson
Publikováno v:
Cell
Regulatory landscapes drive complex developmental gene expression, but it remains unclear how their integrity is maintained when incorporating novel genes and functions during evolution. Here, we investigated how a placental mammal-specific gene, Zfp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47e9142d1b2b33cf90aa22817b71f0ee
https://hdl.handle.net/11588/902575
https://hdl.handle.net/11588/902575
Autor:
Quentin Szabo, M. Phan, Giacomo Cavalli, Cesar Augusto Prada-Medina, Christina Paliou, Sara Hetzel, Michael I. Robson, K. Chudzik, Andrea M. Chiariello, Stephan Haas, Tobias Zehnder, Daniel M. Ibrahim, Alexander Meissner, Andrea Esposito, R. Schoepflin, P. Giere, P. Rothe, Simona Bianco, Martin Vingron, V. Laupert, Dermot Harnett, Stefan Mundlos, Frédéric Bantignies, Alessa R. Ringel, Lars Wittler, Alexandra L. Mattei, Mario Nicodemi, Magdalena Schindler
Publikováno v:
bioRxiv
SUMMARYCohesin loop extrusion facilitates precise gene expression by continuously driving promoters to sample all enhancers located within the same topologically-associated domain (TAD). However, many TADs contain multiple genes with divergent expres
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4599ee2b7ed6fc682687ac1ce79055ae
https://doi.org/10.1101/2021.10.08.463672
https://doi.org/10.1101/2021.10.08.463672
Autor:
Daria Onichtchouk, Carsten O. Daub, Damir Baranasic, Ada Jimenez Gonzalez, Freek van Eeden, Nan Li, Sepand Rastegar, Marcus H. Stoiber, Abdul Kadir Mukarram, Vanessa Chong, Tobias Zehnder, Dennis Wang, Irene Stevens, Joseph W. Wragg, Csilla Várnai, Wolfgang Kopp, Ferenc Müller, Juan M. Vaquerizas, José Luis Gómez-Skarmeta, Sinnakaruppan Mathavan, Scott A. Lacadie, Uwe Ohler, Maciej Lapinski, Hyejeong R. Kim, Shawn M. Burgess, Benjamín Hernández Rodríguez, Fiona C. Wardle, Tatjana Sauka-Spengler, Matthias Hörtenhuber, Zelin Chen, Alison C. McGarvey, Anne E. Eagle, Monte Westerfield, Ozren Bogdanovic, Samuel E. Ross, Noelia Díaz, Cecilia Lanny Winata, Martin Vingron, Piotr J. Balwierz, Piero Carninci, Chirag Nepal, Ryan Martin, Bernard Peers, Ben Brown, Boris Lenhard, Emily V. Chambers, Rafael D. Acemel, Silvia Naranjo, Yavor Hadzhiev, Pelumi Obasaju, Michaël Dong, Fabio M. D’Orazio
Publikováno v:
bioRxiv
Zebrafish, a popular model for embryonic development and for modelling human diseases, has so far lacked a systematic functional annotation programme akin to those in other animal models. To address this, we formed the international DANIO-CODE consor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1840b36d0deb08af1ec0bd42e5451af2
https://hdl.handle.net/21.11116/0000-0009-1A6B-321.11116/0000-0009-1A69-5
https://hdl.handle.net/21.11116/0000-0009-1A6B-321.11116/0000-0009-1A69-5
Autor:
Manuel K. Schneider, Michael Kreuzer, Carmen Ritzmann, Tobias Zehnder, Joel Berard, Caren M. Pauler, Andreas Lüscher
Publikováno v:
Alpine Botany, 130 (2)
Abandonment of pastures and successional shrub expansion are widespread in European mountain regions. Moderate shrub encroachment is perceived beneficial for plant diversity by adding new species without outcompeting existing ones, yet systematic evi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c3407096f23b8032ef00d6da8720403
Macromolecular interactions in alginate–gelatin hydrogels regulate the behavior of human fibroblasts
Autor:
Christoph Alexiou, Iwona Cicha, Bapi Sarker, Tobias Zehnder, Rainer Detsch, Aldo R. Boccaccini, Raminder Singh, Tim Forgber
Publikováno v:
Journal of Bioactive and Compatible Polymers. 32:309-324
Due to the presence of tripeptide arginine–glycine–aspartic acid, gelatin is considered a very promising additive material to improve the cytocompatibility of alginate-based hydrogels. Two different strategies, physical blending and chemical cros
Autor:
Anna-Katharina Hankele, Barbara Drews, Pieter Giesbertz, Daniel Chiumia, Katrin Giller, Joel Berard, Tobias Zehnder, Susanne E. Ulbrich
Publikováno v:
Animal reproduction science. 213
An alpine environment is unique due to pasture biodiversity, with an abundant content of natural antioxidant polyphenols. The present study investigated the effects of lowland and alpine grazing on the oviduct and uterine tissue redox status and amin