Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Toan K Phung"'
Autor:
Lola Rodríguez‐Ruiz, Juan M Lozano‐Gil, Elena Naranjo‐Sánchez, Elena Martínez‐Balsalobre, Alicia Martínez‐López, Christophe Lachaud, Miguel Blanquer, Toan K Phung, Diana García‐Moreno, María L Cayuela, Sylwia D Tyrkalska, Ana B Pérez‐Oliva, Victoriano Mulero
Publikováno v:
EMBO Molecular Medicine, Vol 15, Iss 10, Pp n/a-n/a (2023)
Abstract Chronic inflammatory diseases are associated with hematopoietic lineage bias, including neutrophilia and anemia. We have recently identified that the canonical inflammasome mediates the cleavage of the master erythroid transcription factor G
Externí odkaz:
https://doaj.org/article/b205befa4d104117853060fc54fa807b
Autor:
Edward D. Kerr, Christopher H. Caboche, Cassandra L. Pegg, Toan K. Phung, Claudia Gonzalez Viejo, Sigfredo Fuentes, Mark T. Howes, Kate Howell, Benjamin L. Schulz
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Beer is one of the most popular beverages worldwide. As a product of variable agricultural ingredients and processes, beer has high molecular complexity. We used DIA/SWATH-MS to investigate the proteomic complexity and diversity of 23 commer
Externí odkaz:
https://doaj.org/article/c9d97b75257f40a181f8c3b9b9042c3e
Autor:
Lucia F. Zacchi, Dinora Roche-Recinos, Cassandra L. Pegg, Toan K. Phung, Mark Napoli, Campbell Aitken, Vanessa Sandford, Stephen M. Mahler, Yih Yean Lee, Benjamin L. Schulz, Christopher B. Howard
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-19 (2021)
Zacchi et al. attempt to bridge the gap between understanding the impact of process variables and determination of critical post-translational modifications on a highly complex glycoprotein, factor IX. They implement an LC-MS/MS approach based on dat
Externí odkaz:
https://doaj.org/article/71aba8fb8f8b4392a1a05cbdb5d2e86f
Publikováno v:
Beilstein Journal of Organic Chemistry, Vol 16, Iss 1, Pp 2127-2135 (2020)
Mass spectrometry glycoproteomics is rapidly maturing, allowing unprecedented insights into the diversity and functions of protein glycosylation. However, quantitative glycoproteomics remains challenging. We developed GlypNirO, an automated software
Externí odkaz:
https://doaj.org/article/42aeb34f28e44daa83b96c4fa2743404
Autor:
Rotimi Fasimoye, Wentao Dong, Raja S. Nirujogi, Eshaan S. Rawat, Miharu Iguchi, Kwamina Nyame, Toan K. Phung, Enrico Bagnoli, Alan R. Prescott, Dario R. Alessi, Monther Abu-Remaileh
Publikováno v:
Proceedings of the National Academy of Sciences. 120
The Golgi is a membrane-bound organelle that is essential for protein and lipid biosynthesis. It represents a central trafficking hub that sorts proteins and lipids to various destinations or for secretion from the cell. The Golgi has emerged as a do
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::32d5022614af3608ec969507f27ee02a
https://doi.org/10.1073/pnas.2219953120
https://doi.org/10.1073/pnas.2219953120
Autor:
Robert J. Chalkley, Kai Hooi Khoo, Daniel Kolarich, Erdmann Rapp, Yong Zhang, Hung Yi Wu, Miloslav Sanda, Jonas Nilsson, Enes Sakalli, Gun Wook Park, Doron Kletter, Kathirvel Alagesan, Katalin F. Medzihradszky, Rebeca Kawahara, Nathan Edwards, Radoslav Goldman, Nicolle H. Packer, Yehia Mechref, Wantao Ying, Joseph Zaia, Sriram Neelamegham, Bo Meng, Sergey Y. Vakhrushev, Benjamin L. Schulz, Markus Pioch, Benoit Liquet, Jin Young Kim, Johannes Stadlmann, Benjamin L. Parker, Terry Nguyen-Khuong, Jong Shin Yoo, Adam Pap, Nichollas E. Scott, Mingqi Liu, Marcus Hoffmann, Morten Thaysen-Andersen, Jingfu Zhao, Yingwei Hu, Göran Larson, Matthew S F Choo, Pengyuan Yang, Josef M. Penninger, Marshall Bern, Christina M. Woo, Weiqian Cao, Toan K. Phung, Giuseppe Palmisano, Kai Cheng, Anastasia Chernykh, Stuart M. Haslam, Yifan Huang, Hui Zhang, Cassandra L. Pegg, Georgy Sofronov
Publikováno v:
Nature Methods
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature methods, vol 18, iss 11
Kawahara, R, Chernykh, A, Alagesan, K, Bern, M, Cao, W, Chalkley, R J, Cheng, K, Choo, M S, Edwards, N, Goldman, R, Hoffmann, M, Hu, Y, Huang, Y, Kim, J Y, Kletter, D, Liquet, B, Liu, M, Mechref, Y, Meng, B, Neelamegham, S, Nguyen-Khuong, T, Nilsson, J, Pap, A, Park, G W, Parker, B L, Pegg, C L, Penninger, J M, Phung, T K, Pioch, M, Rapp, E, Sakalli, E, Sanda, M, Schulz, B L, Scott, N E, Sofronov, G, Stadlmann, J, Vakhrushev, S Y, Woo, C M, Wu, H Y, Yang, P, Ying, W, Zhang, H, Zhang, Y, Zhao, J, Zaia, J, Haslam, S M, Palmisano, G, Yoo, J S, Larson, G, Khoo, K H, Medzihradszky, K F, Kolarich, D, Packer, N H & Thaysen-Andersen, M 2021, ' Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis ', Nature Methods, vol. 18, no. 11, pp. 1304-1316 . https://doi.org/10.1038/s41592-021-01309-x
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature methods, vol 18, iss 11
Kawahara, R, Chernykh, A, Alagesan, K, Bern, M, Cao, W, Chalkley, R J, Cheng, K, Choo, M S, Edwards, N, Goldman, R, Hoffmann, M, Hu, Y, Huang, Y, Kim, J Y, Kletter, D, Liquet, B, Liu, M, Mechref, Y, Meng, B, Neelamegham, S, Nguyen-Khuong, T, Nilsson, J, Pap, A, Park, G W, Parker, B L, Pegg, C L, Penninger, J M, Phung, T K, Pioch, M, Rapp, E, Sakalli, E, Sanda, M, Schulz, B L, Scott, N E, Sofronov, G, Stadlmann, J, Vakhrushev, S Y, Woo, C M, Wu, H Y, Yang, P, Ying, W, Zhang, H, Zhang, Y, Zhao, J, Zaia, J, Haslam, S M, Palmisano, G, Yoo, J S, Larson, G, Khoo, K H, Medzihradszky, K F, Kolarich, D, Packer, N H & Thaysen-Andersen, M 2021, ' Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis ', Nature Methods, vol. 18, no. 11, pp. 1304-1316 . https://doi.org/10.1038/s41592-021-01309-x
Glycoproteomics is a powerful yet analytically challenging research tool. Software packages aiding the interpretation of complex glycopeptide tandem mass spectra have appeared, but their relative performance remains untested. Conducted through the HU
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6fd1540e30b1ed9db633b6604fd71731
https://doi.org/10.1038/s41592-021-01309-x
https://doi.org/10.1038/s41592-021-01309-x
Autor:
Rotimi Fasimoye, Wentao Dong, Raja S. Nirujogi, Eshaan S. Rawat, Miharu Iguchi, Kwamina Nyame, Toan K. Phung, Enrico Bagnoli, Alan Prescott, Dario R. Alessi, Monther Abu-Remaileh
The Golgi is a membrane-bound organelle that is essential for protein and lipid biosynthesis. It represents a central trafficking hub that sorts proteins and lipids to various destinations or for secretion from the cell. The Golgi has emerged as a do
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::54c9d7433c35fe17621c3a326d402b4f
https://doi.org/10.1101/2022.11.22.517583
https://doi.org/10.1101/2022.11.22.517583
Autor:
Asad U Malik, Athanasios Karapetsas, Raja S. Nirujogi, Deep Chatterjee, Toan K. Phung, Melanie Wightman, Robert Gourlay, Nick Morrice, Sebastian Mathea, Stefan Knapp, Dario R Alessi
Leucine-rich-repeat-kinase 1 (LRRK1) and its homologue LRRK2 are multidomain kinases possessing a ROC-CORA-CORB containing GTPase domain and phosphorylate distinct Rab proteins. LRRK1 loss of function mutations cause the bone disorder osteosclerotic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ca1c21971ddeab6c7c6de5ddc16f5ffe
https://doi.org/10.1101/2022.06.09.495448
https://doi.org/10.1101/2022.06.09.495448
Publikováno v:
Beilstein Journal of Organic Chemistry, Vol 16, Iss 1, Pp 2127-2135 (2020)
Beilstein Journal of Organic Chemistry
Beilstein Journal of Organic Chemistry
Mass spectrometry glycoproteomics is rapidly maturing, allowing unprecedented insights into the diversity and functions of protein glycosylation. However, quantitative glycoproteomics remains challenging. We developed GlypNirO, an automated software
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15a37a1015512730a90c54fbb929ae82
https://doi.org/10.3762/bjoc.16.180
https://doi.org/10.3762/bjoc.16.180
Publikováno v:
Molecular Omics. 16:100-112
Data Independent Acquisition (DIA) Mass Spectrometry (MS) workflows allow unbiased measurement of all detectable peptides from complex proteomes, but require ion libraries for interrogation of peptides of interest. These DIA ion libraries can be theo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61f706ebcb7ee644a1624dd8248964a5
https://doi.org/10.1039/c9mo00125e
https://doi.org/10.1039/c9mo00125e