Data publication with the structural biology data grid supports live analysis

Autor: Pa, Meyer, Socias S, Key J, Ransey E, Ec, Tjon, Alejandro Buschiazzo, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Ks, Anderson, Rh, Baxter, Sc, Blacklow, Tj, Boggon, Am, Bonvin, Borek D, Tj, Brett, Caflisch A, Ci, Chang

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Meyer, PA; Socias, S; Key, J; Ransey, E; Tjon, EC; Buschiazzo, A; et al.(2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7. doi: 10.1038/ncomms10882. UCLA: Retrieved from: http://www.escholarship.org/uc/item/9jx4r4s5
Nature Communications, Nature Publishing Group, 2016, 7, 〈10.1038/ncomms10882〉
Nature Communications, Nature Publishing Group, 2016, 7, ⟨10.1038/ncomms10882⟩
Nature Communications [E], 7
Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Christopher Fromme, J; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr (2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7:10882.
Nature Communications
Nature communications, vol 7, iss 1
Yousif Shamoo
Nature Publishing Group

The validation and analysis of X-ray crystallographic data is essential for reproducibility and the development of crystallographic methods. Here, the authors describe a repository for crystallographic datasets and demonstrate some of the ways it cou

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::766a01370e8ba6bb6c22fe26e0077076
https://www.ncbi.nlm.nih.gov/pubmed/26947396

Distinct functional constraints driving conservation of the cofilin N-terminal regulatory tail.

Autor: Sexton JA; Department of Pharmacology, Yale School of Medicine, New Haven, CT, 06520, USA., Potchernikov T; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., Bibeau JP; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., Casanova-Sepúlveda G; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., Cao W; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., Lou HJ; Department of Pharmacology, Yale School of Medicine, New Haven, CT, 06520, USA., Boggon TJ; Department of Pharmacology, Yale School of Medicine, New Haven, CT, 06520, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., De La Cruz EM; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA., Turk BE; Department of Pharmacology, Yale School of Medicine, New Haven, CT, 06520, USA. ben.turk@yale.edu.

Publikováno v: Nature communications [Nat Commun] 2024 Feb 16; Vol. 15 (1), pp. 1426. Date of Electronic Publication: 2024 Feb 16.

Mutation of key signaling regulators of cerebrovascular development in vein of Galen malformations.

Autor: Zhao S; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Mekbib KY; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., van der Ent MA; Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA., Allington G; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, USA., Prendergast A; Yale Zebrafish Research Core, Yale School of Medicine, New Haven, CT, USA., Chau JE; Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, CT, USA., Smith H; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Shohfi J; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Ocken J; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Duran D; Department of Neurosurgery, University of Mississippi Medical Center, Jackson, MS, USA., Furey CG; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA.; Department of Neurosurgery, Barrow Neurological Institute, Phoenix, AZ, USA.; Ivy Brain Tumor Center, Department of Translational Neuroscience, Barrow Neurological Institute, Phoenix, AZ, USA., Hao LT; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Duy PQ; Department of Neurosurgery, University of Virginia School of Medicine, Charlottesville, VA, USA., Reeves BC; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Zhang J; Department of Genetics, Yale School of Medicine, New Haven, CT, USA., Nelson-Williams C; Department of Genetics, Yale School of Medicine, New Haven, CT, USA., Chen D; Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA., Li B; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA., Nottoli T; Yale Genome Editing Center, Department of Comparative Medicine, Yale School of Medicine, New Haven, CT, USA., Bai S; Yale Genome Editing Center, Department of Comparative Medicine, Yale School of Medicine, New Haven, CT, USA., Rolle M; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Zeng X; Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, CT, USA.; Laboratory of Human Genetics and Genomics, The Rockefeller University, New York, NY, USA., Dong W; Department of Genetics, Yale School of Medicine, New Haven, CT, USA.; Laboratory of Human Genetics and Genomics, The Rockefeller University, New York, NY, USA., Fu PY; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA., Wang YC; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA., Mane S; Department of Genetics, Yale School of Medicine, New Haven, CT, USA., Piwowarczyk P; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Fehnel KP; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., See AP; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Iskandar BJ; Department of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA., Aagaard-Kienitz B; Department of Neurological Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.; Department of Radiology, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA., Moyer QJ; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Dennis E; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Kiziltug E; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Kundishora AJ; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., DeSpenza T Jr; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Greenberg ABW; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Kidanemariam SM; Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON, Canada., Hale AT; Department of Neurosurgery, University of Alabama School of Medicine, Birmingham, AL, USA., Johnston JM; Department of Neurosurgery, University of Alabama School of Medicine, Birmingham, AL, USA., Jackson EM; Department of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA., Storm PB; Department of Neurosurgery, Hospital of the University of Pennsylvania, Philadelphia, PA, USA.; 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Department of Interventional Neuroradiology, Hôpital Fondation A. de Rothschild, Paris, France., Berenstein A; Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Barak T; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Erson-Omay EZ; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., Zhao H; Department of Genetics, Yale School of Medicine, New Haven, CT, USA.; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA., Moreno-De-Luca A; Department of Radiology, Autism & Developmental Medicine Institute, Genomic Medicine Institute, Geisinger, Danville, PA, USA., Proctor MR; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Smith ER; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Orbach DB; Department of Neurosurgery, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.; Department of Neurointerventional Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Alper SL; Division of Nephrology and Center for Vascular Biology Research, Beth Israel Deaconess Medical Center, and Department of Medicine, Harvard Medical School, Boston, MA, USA., Nicoli S; Department of Genetics, Yale School of Medicine, New Haven, CT, USA.; Department of Pharmacology, Yale School of Medicine, New Haven, CT, USA.; Yale Cardiovascular Research Center, Department of Internal Medicine, Section of Cardiology, Yale School of Medicine, New Haven, CT, USA., Boggon TJ; Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, CT, USA.; Department of Pharmacology, Yale School of Medicine, New Haven, CT, USA., Lifton RP; Laboratory of Human Genetics and Genomics, The Rockefeller University, New York, NY, USA., Gunel M; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA., King PD; Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA. kingp@umich.edu., Jin SC; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA. jin810@wustl.edu.; Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA. jin810@wustl.edu., Kahle KT; Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA. Kahle.Kristopher@mgh.harvard.edu.; Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA. Kahle.Kristopher@mgh.harvard.edu.; Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, US. Kahle.Kristopher@mgh.harvard.edu.; Broad Institute of MIT and Harvard, Cambridge, MA, USA. Kahle.Kristopher@mgh.harvard.edu.

Publikováno v: Nature communications [Nat Commun] 2023 Nov 17; Vol. 14 (1), pp. 7452. Date of Electronic Publication: 2023 Nov 17.

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP, and Dok1.

Autor: Vish KJ; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA., Stiegler AL; Department of Pharmacology, Yale University, New Haven, Connecticut, USA., Boggon TJ; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA; Department of Pharmacology, Yale University, New Haven, Connecticut, USA; Department of Yale Cancer Center, Yale University, New Haven, Connecticut, USA. Electronic address: titus.boggon@yale.edu.

Publikováno v: The Journal of biological chemistry [J Biol Chem] 2023 Sep; Vol. 299 (9), pp. 105098. Date of Electronic Publication: 2023 Jul 27.

Distinct functional constraints driving conservation of the cofilin N-terminal regulatory tail.

Autor: Sexton JA; Department of Pharmacology, Yale School of Medicine, New Haven, CT 06520., Potchernikov T; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., Bibeau JP; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., Casanova-Sepúlveda G; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., Cao W; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., Lou HJ; Department of Pharmacology, Yale School of Medicine, New Haven, CT 06520., Boggon TJ; Department of Pharmacology, Yale School of Medicine, New Haven, CT 06520.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., De La Cruz EM; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520., Turk BE; Department of Pharmacology, Yale School of Medicine, New Haven, CT 06520.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 09. Date of Electronic Publication: 2023 Jul 09.