Zobrazeno 1 - 10
of 298
pro vyhledávání: '"Timothy P. L. Smith"'
Autor:
Xiaodong Liu, Long Lin, Mikkel-Holger S. Sinding, Laura D. Bertola, Kristian Hanghøj, Liam Quinn, Genís Garcia-Erill, Malthe Sebro Rasmussen, Mikkel Schubert, Patrícia Pečnerová, Renzo F. Balboa, Zilong Li, Michael P. Heaton, Timothy P. L. Smith, Rui Resende Pinto, Xi Wang, Josiah Kuja, Anna Brüniche-Olsen, Jonas Meisner, Cindy G. Santander, Joseph O. Ogutu, Charles Masembe, Rute R. da Fonseca, Vincent Muwanika, Hans R. Siegismund, Anders Albrechtsen, Ida Moltke, Rasmus Heller
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract The blue wildebeest (Connochaetes taurinus) is a keystone species in savanna ecosystems from southern to eastern Africa, and is well known for its spectacular migrations and locally extreme abundance. In contrast, the black wildebeest (C. gn
Externí odkaz:
https://doaj.org/article/f71c0996365a44c290665498362d89cb
Autor:
Renzo F. Balboa, Laura D. Bertola, Anna Brüniche-Olsen, Malthe Sebro Rasmussen, Xiaodong Liu, Guillaume Besnard, Jordi Salmona, Cindy G. Santander, Shixu He, Dietmar Zinner, Miguel Pedrono, Vincent Muwanika, Charles Masembe, Mikkel Schubert, Josiah Kuja, Liam Quinn, Genís Garcia-Erill, Frederik Filip Stæger, Rianja Rakotoarivony, Margarida Henrique, Long Lin, Xi Wang, Michael P. Heaton, Timothy P. L. Smith, Kristian Hanghøj, Mikkel-Holger S. Sinding, Anagaw Atickem, Lounès Chikhi, Christian Roos, Philippe Gaubert, Hans R. Siegismund, Ida Moltke, Anders Albrechtsen, Rasmus Heller
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)
Abstract Several African mammals exhibit a phylogeographic pattern where closely related taxa are split between West/Central and East/Southern Africa, but their evolutionary relationships and histories remain controversial. Bushpigs (Potamochoerus la
Externí odkaz:
https://doaj.org/article/fb49b35934fa4d6a852438359aab82d8
Autor:
Margaret D. Weinroth, Michael L. Clawson, Gregory P. Harhay, Mark Eppinger, Dayna M. Harhay, Timothy P. L. Smith, James L. Bono
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Shiga toxin-producing Escherichia coli (STEC) O157:H7 strains with the T allele in the translocated intimin receptor polymorphism (tir) 255 A > T gene associate with human disease more than strains with an A allele; however, the allele is not thought
Externí odkaz:
https://doaj.org/article/d9a0306cf8ed46d69c809ab1697f8851
Autor:
Tyson Fuller, Derek M. Bickhart, Lisa M. Koch, Lisa Kissing Kucek, Shahjahan Ali, Haley Mangelson, Maria J. Monteros, Timothy Hernandez, Timothy P. L. Smith, Heathcliffe Riday, Michael L. Sullivan
Publikováno v:
GigaByte (2023)
Vicia villosa is an incompletely domesticated annual legume of the Fabaceae family native to Europe and Western Asia. V. villosa is widely used as a cover crop and forage due to its ability to withstand harsh winters. Here, we generated a reference-q
Externí odkaz:
https://doaj.org/article/f37f0d931ef94f9ba8665d3b69a029fd
Autor:
Timothy P. L. Smith, Derek M. Bickhart, Didier Boichard, Amanda J. Chamberlain, Appolinaire Djikeng, Yu Jiang, Wai Y. Low, Hubert Pausch, Sebastian Demyda-Peyrás, James Prendergast, Robert D. Schnabel, Benjamin D. Rosen, Bovine Pangenome Consortium
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies an
Externí odkaz:
https://doaj.org/article/9cae407ce35348009db41561c5c7acf7
Autor:
Yan Ren, Elizabeth Tseng, Timothy P. L. Smith, Stefan Hiendleder, John L. Williams, Wai Yee Low
Publikováno v:
BMC Genomics, Vol 24, Iss 1, Pp 1-15 (2023)
Abstract The Iso-Seq method of full-length cDNA sequencing is suitable to quantify differentially expressed genes (DEGs), transcripts (DETs) and transcript usage (DTU). However, the higher cost of Iso-Seq relative to RNA-seq has limited the compariso
Externí odkaz:
https://doaj.org/article/8d810fdf2970432387c90b775df4176e
Autor:
Brenda Oppert, Aaron T. Dossey, Fu-Chyun Chu, Eva Šatović-Vukšić, Miroslav Plohl, Timothy P. L. Smith, Sergey Koren, Morgan L. Olmstead, Dewey Leierer, Gail Ragan, J. Spencer Johnston
Publikováno v:
Genes, Vol 14, Iss 12, p 2209 (2023)
Background: Insects are a sustainable source of protein for human food and animal feed. We present a genome assembly, CRISPR gene editing, and life stage-specific transcriptomes for the yellow mealworm, Tenebrio molitor, one of the most intensively f
Externí odkaz:
https://doaj.org/article/5532bda9d3184285aa2d9ea820c70917
Autor:
Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Kristen L. Kuhn, Timothy P. L. Smith, Benjamin D. Rosen, Hubert Pausch
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-13 (2022)
Pangenomes have a number of advantages over linear reference assemblies. Here the authors use bovine haplotype-resolved assemblies to show that structural variant-based pangenomes are consistent regardless of sequence platform, assembler, or coverage
Externí odkaz:
https://doaj.org/article/57ff639592064173af9b68fcf0522c73
Autor:
Wai Yee Low, Benjamin D. Rosen, Yan Ren, Derek M. Bickhart, Thu-Hien To, Fergal J. Martin, Konstantinos Billis, Tad S. Sonstegard, Shawn T. Sullivan, Stefan Hiendleder, John L. Williams, Michael P. Heaton, Timothy P. L. Smith
Publikováno v:
BMC Genomics, Vol 23, Iss 1, Pp 1-15 (2022)
Abstract Background The gaur (Bos gaurus) is the largest extant wild bovine species, native to South and Southeast Asia, with unique traits, and is listed as vulnerable by the International Union for Conservation of Nature (IUCN). Results We report t
Externí odkaz:
https://doaj.org/article/84c7933feeb842ee95309f9a58508ce6
Autor:
Ruijie Liu, Rick Tearle, Wai Yee Low, Tong Chen, Dana Thomsen, Timothy P. L. Smith, Stefan Hiendleder, John L. Williams
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)
Abstract Background There are two genetically distinct subspecies of cattle, Bos taurus taurus and Bos taurus indicus, which arose from independent domestication events. The two types of cattle show substantial phenotypic differences, some of which e
Externí odkaz:
https://doaj.org/article/2997b310cf0142fdab75141fcee61531