Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Tilgner HU"'
Autor:
Biegler MT; The Rockefeller University, New York NY, USA. Electronic address: mbiegler@rockefeller.edu., Belay K; The Rockefeller University, New York NY, USA., Wang W; The Rockefeller University, New York NY, USA., Szialta C; The Rockefeller University, New York NY, USA., Collier P; Weill Cornell Medicine, New York NY, USA., Luo JD; The Rockefeller University, New York NY, USA., Haase B; The Rockefeller University, New York NY, USA., Gedman GL; The Rockefeller University, New York NY, USA., Sidhu AV; The Rockefeller University, New York NY, USA., Harter E; The Rockefeller University, New York NY, USA., Rivera-López C; Harvard University, Cambridge, MA, USA., Amoako-Boadu K; New York University, New York NY, USA., Fedrigo O; The Rockefeller University, New York NY, USA., Tilgner HU; Weill Cornell Medicine, New York NY, USA., Carroll T; The Rockefeller University, New York NY, USA., Jarvis ED; The Rockefeller University, New York NY, USA; Howard Hughes Medical Institute, Chevy Chase, MD, USA. Electronic address: ejarvis@rockefeller.edu., Keyte AL; The Rockefeller University, New York NY, USA. Electronic address: anna@colossal.com.
Publikováno v:
Developmental biology [Dev Biol] 2024 Aug 28; Vol. 517, pp. 73-90. Date of Electronic Publication: 2024 Aug 28.
Autor:
Gong B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Li D; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Łabaj PP; Małopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.; Bioinformatics Research, Institute of Molecular Biotechnology, Boku University Vienna, Vienna, Austria., Pan B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Novoradovskaya N; Agilent Technologies, Inc., 11011 N Torrey Pines Rd., La Jolla, CA, 92037, USA., Thierry-Mieg D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, 20894, USA., Thierry-Mieg J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, 20894, USA., Chen G; Department of Immunology, Genomics and Microarray Core Facility, University of Texas Southwestern Medical Center, 5323 Harry Hine Blvd., Dallas, TX, 75390, USA., Bergstrom Lucas A; Agilent Technologies, Inc., 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., LoCoco JS; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA., Richmond TA; Market & Application Development Bioinformatics, Roche Sequencing Solutions Inc., 4300 Hacienda Dr., Pleasanton, CA, 94588, USA., Tseng E; PacBio, San Francisco, USA., Kusko R; Cellino Bio, 750 Main Street, Cambridge, MA, 02143, USA., Happe S; Agilent Technologies, Inc., 1834 State Hwy 71 West, Cedar Creek, TX, 78612, USA., Mercer TR; Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD, Australia., Pabón-Peña C; Agilent Technologies, Inc., 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., Salmans M; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA., Tilgner HU; Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Xiao W; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA.; Massachusetts General Hospital, Harvard Medical School, Boston, MA, 02114, USA., Johann DJ Jr; Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301W Markham St., Little Rock, AR, 72205, USA., Jones W; Q squared Solutions Genomics, 2400 Elis Road, Durham, NC, 27703, USA., Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Mason CE; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA. chm2042@med.cornell.edu.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.; The WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu., Kreil DP; Bioinformatics Research, Institute of Molecular Biotechnology, Boku University Vienna, Vienna, Austria. David.Kreil@boku.ac.at., Xu J; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA. Joshua.Xu@fda.hhs.gov.
Publikováno v:
Scientific data [Sci Data] 2024 Aug 16; Vol. 11 (1), pp. 892. Date of Electronic Publication: 2024 Aug 16.
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Autor:
Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Reese F; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., De María M; Department of Physiological Sciences, College of Veterinary Medicine, Gainesville, FL, USA.; Cherokee Nation System Solutions, contractor to the US Geological Survey-Wetland and Aquatic Research Center, Gainesville, FL, USA., Adams MS; Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA, USA., Balderrama-Gutierrez G; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA., Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Gonzalez Martinez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Flomics Biotech, SL, Barcelona, Spain., Liang CE; Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA, USA., Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Meade MJ; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA., Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA., Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia., Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada., Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA., Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA., Çelik MH; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA., Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia., Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore., Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada., Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan., Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Li JL; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, NC, USA., Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK., Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Nip KM; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada., Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA., Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia., Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Wan YK; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore., Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia., Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA., Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada., Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Berry AE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Capella-Gutierrez S; Barcelona Supercomputing Center, Barcelona, Spain., Cousineau A; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Chan Medical School, Worcester, MA, USA., Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Fernandez-Gonzalez JM; Barcelona Supercomputing Center, Barcelona, Spain., Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Garcia-Reyero N; Energy, Installations & Environment, Office of the Assistant Secretary of Defense, Washington, DC, USA., Götz S; Biobam Bioinformatics, Valencia, Spain., Hernández-Ferrer C; Barcelona Supercomputing Center, Barcelona, Spain., Kondratova L; Genetics Institute, University of Florida, Gainesville, FL, USA., Liu T; Cardiff University, Cardiff, UK., Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Menor C; Biobam Bioinformatics, Valencia, Spain., Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA., Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Repchevsky D; Barcelona Supercomputing Center, Barcelona, Spain., Ren X; Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA., Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY, USA., Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA., Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA., Smith ML; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY, USA., Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK., Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan., Youngworth IA; Department of Genetics, Stanford University, Palo Alto, CA, USA., Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy., Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, Gainesville, FL, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences, University of Florida, Gainesville, FL, USA., Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain., Hunter ME; US Geological Survey, Wetland and Aquatic Research Center, Gainesville, FL, USA., Maehr R; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Chan Medical School, Worcester, MA, USA., Shen Y; Institute for Human Genetics, Department of Neurology, University of California, San Francisco, San Francisco, CA, USA., Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, NY, USA., Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA. vollmers@ucsc.edu., Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge, UK. frankish@ebi.ac.uk., Au KF; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA. kinfai@med.umich.edu.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA. kinfai@med.umich.edu., Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu.; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu.; UVA Cancer Center, University of Virginia, Charlottesville, VA, USA. gs9yr@virginia.edu., Mortazavi A; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA. ali.mortazavi@uci.edu.; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA. ali.mortazavi@uci.edu., Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain. ana.conesa@csic.es.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL, USA. ana.conesa@csic.es., Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA. anbrooks@ucsc.edu.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA. anbrooks@ucsc.edu.
Publikováno v:
Nature methods [Nat Methods] 2024 Jul; Vol. 21 (7), pp. 1349-1363. Date of Electronic Publication: 2024 Jun 07.
Autor:
Ament SA; University of Maryland School of Medicine, Baltimore, MD, USA. sament@som.umaryland.edu., Campbell RR; University of Maryland School of Medicine, Baltimore, MD, USA., Lobo MK; University of Maryland School of Medicine, Baltimore, MD, USA., Receveur JP; University of Maryland School of Medicine, Baltimore, MD, USA., Agrawal K; Yale School of Medicine, New Haven, CT, USA., Borjabad A; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Byrareddy SN; University of Nebraska Medical Center, Omaha, NE, USA., Chang L; University of Maryland School of Medicine, Baltimore, MD, USA., Clarke D; Yale School of Medicine, New Haven, CT, USA., Emani P; Yale School of Medicine, New Haven, CT, USA., Gabuzda D; Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA., Gaulton KJ; University of California San Diego, La Jolla, CA, USA., Giglio M; University of Maryland School of Medicine, Baltimore, MD, USA., Giorgi FM; University of Bologna, Bologna, Italy., Gok B; Boston University, Boston, MA, USA., Guda C; University of Nebraska Medical Center, Omaha, NE, USA., Hadas E; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Herb BR; University of Maryland School of Medicine, Baltimore, MD, USA., Hu W; Weill Cornell Medicine, New York, NY, USA., Huttner A; Yale School of Medicine, New Haven, CT, USA., Ishmam MR; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Jacobs MM; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kelschenbach J; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kim DW; Allen Institute for Brain Science, Seattle, WA, USA., Lee C; University of California Irvine, Irvine, CA, USA., Liu S; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Liu X; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Madras BK; McLean Hospital, Harvard Medical School, Belmont, MA, USA., Mahurkar AA; University of Maryland School of Medicine, Baltimore, MD, USA., Mash DC; University of Miami, Miami, FL, USA., Mukamel EA; University of California San Diego, La Jolla, CA, USA., Niu M; University of Nebraska Medical Center, Omaha, NE, USA., O'Connor RM; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Pagan CM; Allen Institute for Brain Science, Seattle, WA, USA., Pang APS; Weill Cornell Medicine, New York, NY, USA., Pillai P; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Repunte-Canonigo V; The Scripps Research Institute, La Jolla, CA, USA., Ruzicka WB; McLean Hospital, Harvard Medical School, Belmont, MA, USA., Stanley J; Yale School of Medicine, New Haven, CT, USA., Tickle T; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Tsai SA; National Institute on Drug Abuse, Bethesda, MD, USA., Wang A; University of California San Diego, La Jolla, CA, USA., Wills L; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Wilson AM; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Wright SN; National Institute on Drug Abuse, Bethesda, MD, USA., Xu S; University of California Irvine, Irvine, CA, USA., Yang J; Yale School of Medicine, New Haven, CT, USA., Zand M; University of California San Diego, La Jolla, CA, USA., Zhang L; Yale School of Medicine, New Haven, CT, USA., Zhang J; University of California Irvine, Irvine, CA, USA., Akbarian S; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Buch S; University of Nebraska Medical Center, Omaha, NE, USA., Cheng CS; University of California San Diego, La Jolla, CA, USA., Corley MJ; Weill Cornell Medicine, New York, NY, USA., Fox HS; University of Nebraska Medical Center, Omaha, NE, USA., Gerstein M; Yale School of Medicine, New Haven, CT, USA., Gummuluru S; Boston University, Boston, MA, USA., Heiman M; Massachusetts Institute of Technology, Cambridge, MA, USA., Ho YC; Yale School of Medicine, New Haven, CT, USA., Kellis M; Massachusetts Institute of Technology, Cambridge, MA, USA., Kenny PJ; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kluger Y; Yale School of Medicine, New Haven, CT, USA., Milner TA; Weill Cornell Medicine, New York, NY, USA., Moore DJ; University of California San Diego, La Jolla, CA, USA., Morgello S; Icahn School of Medicine at Mount Sinai, New York, NY, USA., Ndhlovu LC; Weill Cornell Medicine, New York, NY, USA., Rana TM; University of California San Diego, La Jolla, CA, USA., Sanna PP; The Scripps Research Institute, La Jolla, CA, USA., Satterlee JS; National Institute on Drug Abuse, Bethesda, MD, USA., Sestan N; Yale School of Medicine, New Haven, CT, USA., Spector SA; University of California San Diego, La Jolla, CA, USA., Spudich S; Yale School of Medicine, New Haven, CT, USA., Tilgner HU; Weill Cornell Medicine, New York, NY, USA., Volsky DJ; Icahn School of Medicine at Mount Sinai, New York, NY, USA., White OR; University of Maryland School of Medicine, Baltimore, MD, USA., Williams DW; Emory University School of Medicine, Atlanta, GA, USA., Zeng H; Allen Institute for Brain Science, Seattle, WA, USA.
Publikováno v:
Molecular psychiatry [Mol Psychiatry] 2024 Jun 15. Date of Electronic Publication: 2024 Jun 15.
Autor:
Joglekar A; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA.; New York Genome Center, New York, NY, USA., Hu W; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Zhang B; Spatial Genomics, Inc., Pasadena, CA, USA., Narykov O; Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA.; Computer Science Department, Worcester Polytechnic Institute, Worcester, MA, USA.; Data Science Program, Worcester Polytechnic Institute, Worcester, MA, USA., Diekhans M; UC Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Marrocco J; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Department of Biology, Touro University, New York, NY, USA.; Laboratory of Neuroendocrinology, The Rockefeller University, New York, NY, USA., Balacco J; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Ndhlovu LC; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, NY, USA., Milner TA; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA., Fedrigo O; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Jarvis ED; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Sheynkman G; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA, USA.; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.; UVA Comprehensive Cancer Center, University of Virginia, Charlottesville, VA, USA., Korkin D; Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA.; Computer Science Department, Worcester Polytechnic Institute, Worcester, MA, USA.; Data Science Program, Worcester Polytechnic Institute, Worcester, MA, USA., Ross ME; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Tilgner HU; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA. hut2006@med.cornell.edu.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA. hut2006@med.cornell.edu.
Publikováno v:
Nature neuroscience [Nat Neurosci] 2024 Jun; Vol. 27 (6), pp. 1051-1063. Date of Electronic Publication: 2024 Apr 09.
Autor:
Hu W; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Foord C; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Hsu J; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Fan L; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Helen and Robert Appel Alzheimer's Disease Research Institute., Corley MJ; Department of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, NY, USA., Bhatia TN; Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA., Xu S; Department of Computer Science, University of California, Irvine, CA, USA., Belchikov N; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA.; Physiology, Biophysics & Systems Biology Program, Weill Cornell Medicine, New York, NY, USA., He Y; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Pang AP; Department of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, NY, USA., Lanjewar SN; Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA., Jarroux J; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Joglekar A; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Milner TA; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA., Ndhlovu LC; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, NY, USA., Zhang J; Department of Computer Science, University of California, Irvine, CA, USA., Butelman E; Neuropsychoimaging of Addiction and Related Conditions Research Program, Dept. of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Sloan SA; Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA., Lee VM; Center for Neurodegenerative Disease Research, University of Pennsylvania School of Medicine, Philadelphia, PA, USA., Gan L; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Helen and Robert Appel Alzheimer's Disease Research Institute., Tilgner HU; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Feb 28. Date of Electronic Publication: 2024 Feb 28.
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Autor:
Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; These authors contributed equally to this work., Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Reese F; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; These authors contributed equally to this work., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; These authors contributed equally to this work., Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., De María M; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Adams MS; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Balderrama-Gutierrez G; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Gonzalez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Flomics Biotech, Dr Aiguader 88, Barcelona 08003, Spain.; These authors contributed equally to this work., Liang CE; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Jerryd Meade M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; These authors contributed equally to this work., Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; These authors contributed equally to this work., Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Hasan Çelik M; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore., Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan., Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Liang Li J; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK., Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Ming Nip K; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Kei Wan Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore., Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Berry A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Capella S; Barcelona Supercomputing Cente, Barcelona, Spain., Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Fernandez-Gonzalez JM; Barcelona Supercomputing Cente, Barcelona, Spain., Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Garcia-Reyero N; Environmental Laboratory, US Army Engineer Research & Development Center, Vicksburg, USA., Goetz S; Biobam Bioinformatics SL, Valencia, Spain., Hernández-Ferrer C; Barcelona Supercomputing Cente, Barcelona, Spain., Kondratova L; Genetics Institute, University of Florida, Gainesville, USA., Liu T; Cardiff University, Cardiff, UK., Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Menor C; Biobam Bioinformatics SL, Valencia, Spain., Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA., Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Repchevsky D; Barcelona Supercomputing Cente, Barcelona, Spain., Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK, UK., Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA., Laird Smith M; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan., Youngworth IA; Department of Genetics, Stanford University, Palo Alto, USA., Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy., Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences,, University of Florida, Gainesville, USA., Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain., Hunter ME; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, USA., Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, USA., Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fai Au K; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA., Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; Center for Public Health Genomics.; UVA Cancer Center, University of Virginia, Charlottesville, USA., Mortazavi A; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, USA., Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 27. Date of Electronic Publication: 2023 Jul 27.
Autor:
Prjibelski AD; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia. andrewprzh@gmail.com.; Department of Computer Science, University of Helsinki, Helsinki, Finland. andrewprzh@gmail.com., Mikheenko A; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia., Joglekar A; Tri-Institutional Computational Biology and Medicine, Weill Cornell Medicine, New York, NY, USA.; Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Smetanin A; Bioinformatics Institute, St. Petersburg, Russia., Jarroux J; Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Lapidus AL; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia., Tilgner HU; Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA. hut2006@med.cornell.edu.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA. hut2006@med.cornell.edu.
Publikováno v:
Nature biotechnology [Nat Biotechnol] 2023 Jul; Vol. 41 (7), pp. 915-918. Date of Electronic Publication: 2023 Jan 02.
Autor:
Joglekar A; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Foord C; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Jarroux J; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Pollard S; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Tilgner HU; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA.
Publikováno v:
Transcription [Transcription] 2023 Jun-Oct; Vol. 14 (3-5), pp. 92-104. Date of Electronic Publication: 2023 Jun 14.
Autor:
Joglekar A; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Hu W; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Zhang B; Spatial Genomics, Inc. Pasadena, CA., Narykov O; Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA.; Computer Science Department, Worcester Polytechnic Institute, Worcester, MA, USA.; Data Science Program, Worcester Polytechnic Institute, Worcester, MA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA., Balacco J; Vertebrate Genome Lab, the Rockefeller University, New York, NY., Ndhlovu LC; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, NY, USA., Milner TA; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA., Fedrigo O; Vertebrate Genome Lab, the Rockefeller University, New York, NY., Jarvis ED; Vertebrate Genome Lab, the Rockefeller University, New York, NY.; Laboratory of Neurogenetics of Language, the Rockefeller University, New York, NY.; Howard Hughes Medical Institute, Chevy Chase, MD., Sheynkman G; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA, USA.; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.; UVA Comprehensive Cancer Center, University of Virginia, Charlottesville, Virginia, USA., Korkin D; Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA.; Computer Science Department, Worcester Polytechnic Institute, Worcester, MA, USA.; Data Science Program, Worcester Polytechnic Institute, Worcester, MA, USA., Ross ME; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA., Tilgner HU; Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.; Center for Neurogenetics, Weill Cornell Medicine, New York, NY, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 04. Date of Electronic Publication: 2023 Apr 04.