Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language

Autor: Crusoe, Michael R., Abeln, Sanne, Iosup, Alexandru, Amstutz, Peter, Chilton, John, Tijanić, Nebojša, Ménager, Hervé, Soiland-Reyes, Stian, Gavrilovic, Bogdan, Goble, Carole

Publikováno v: Commun. ACM 65 (2022) 54-63

Computational Workflows are widely used in data analysis, enabling innovation and decision-making. In many domains (bioinformatics, image analysis, & radio astronomy) the analysis components are numerous and written in multiple different computer lan

Externí odkaz: http://arxiv.org/abs/2105.07028

Methods Included.

Autor: CRUSOE, MICHAEL R., ABELN, SANNE, IOSUP, ALEXANDRU, AMSTUTZ, PETER, CHILTON, JOHN, TIJANIĆ, NEBOJŠA, MÉNAGER, HERVÉ, SOILAND-REYES, STIAN, GAVRILOVIĆ, BOGDAN, GOBLE, CAROLE

Publikováno v: Communications of the ACM; Jun2022, Vol. 65 Issue 6, p54-63, 10p, 1 Color Photograph, 3 Diagrams, 1 Chart

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Portable workflow and tool descriptions with the CWL

Autor: Amstutz, Peter, Tijanić, Nebojša, Soiland-Reyes, Stian, Kern, John, Stojanovic, Luka, Pierce, Tim, Chilton, John, Mikheev, Maxim, Lampa, Samuel, Ménager, Hervé, Frazer, Scott, Malladi, Venkat Sai, Crusoe, Michael R.

Publikováno v: Amstutz, P, Tijanić, N, Soiland-Reyes, S, Kern, J, Stojanovic, L, Pierce, T, Chilton, J, Mikheev, M, Lampa, S, Ménager, H, Frazer, S, Malladi, V S & Crusoe, M R 2015, ' Portable workflow and tool descriptions with the CWL ' Bioinformatics Open Source Conference, Dublin, Ireland, 10/06/15-11/06/15, .

Bioinformatics workflow platforms provide provenance tracking, execution and data management, repeatability, and an environment for data exploration and visualization. Example F/OSS bioinformatics workflow platforms include Arvados, Galaxy, Mobyle, i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3818::8a2042ae71c2ee04932e81cb34735719
https://github.com/common-workflow-language/2015-bosc/blob/master/bosc_abstract/cwl_abstract_bosc.md