Zobrazeno 1 - 10 of 16 pro vyhledávání: '"Tiffany R Baker"'
1
Akademický článek
An integrated model of the transcriptome of HER2-positive breast cancer.
Autor: Krishna R Kalari, Brian M Necela, Xiaojia Tang, Kevin J Thompson, Melissa Lau, Jeanette E Eckel-Passow, Jennifer M Kachergus, S Keith Anderson, Zhifu Sun, Saurabh Baheti, Jennifer M Carr, Tiffany R Baker, Poulami Barman, Derek C Radisky, Richard W Joseph, Sarah A McLaughlin, High-seng Chai, Stephan Camille, David Rossell, Yan W Asmann, E Aubrey Thompson, Edith A Perez
Publikováno v: PLoS ONE, Vol 8, Iss 11, p e79298 (2013)
Our goal in these analyses was to use genomic features from a test set of primary breast tumors to build an integrated transcriptome landscape model that makes relevant hypothetical predictions about the biological and/or clinical behavior of HER2-po
Externí odkaz: https://doaj.org/article/b4f7343083b74f57913c4b514a195e31
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2
Akademický článek
Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.
Autor: Zhifu Sun, Yan W Asmann, Asha Nair, Yuji Zhang, Liguo Wang, Krishna R Kalari, Aditya V Bhagwate, Tiffany R Baker, Jennifer M Carr, Jean-Pierre A Kocher, Edith A Perez, E Aubrey Thompson
Publikováno v: PLoS ONE, Vol 8, Iss 8, p e71745 (2013)
OBJECTIVES: The sequencing by the PolyA selection is the most common approach for library preparation. With limited amount or degraded RNA, alternative protocols such as the NuGEN have been developed. However, it is not yet clear how the different li
Externí odkaz: https://doaj.org/article/4ad6a5cd7dec4f538b7e1b0e26dc1fad
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3
Akademický článek
Deep sequence analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations
Autor: Krishna R Kalari, David eRossell, Brian M Necela, Yan W Asmann, Asha eNair, Saurabh eBaheti, Jennifer M Kachergus, Curtis S Younkin, Tiffany R Baker, Jennifer M Carr, Xiaojia eTang, Michael eWalsh, High Seng eChai, Zhifu eSun, Steven N Hart, Alexey A Leontovich, Asif eHossain, Jean-Pierre eKocher, Edith A Perez, David N Reisman, Alan P Fields, E. Aubrey eThompson
Publikováno v: Frontiers in Oncology, Vol 2 (2012)
KRAS mutations are highly prevalent in non-small cell lung cancer (NSCLC), and tumors harboring these mutations tend to be aggressive and resistant to chemotherapy. We used next-generation sequencing technology to identify pathways that are specifica
Externí odkaz: https://doaj.org/article/131a3715ba6d4f08a6790b57ec719bed
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4
Akademický článek
Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.
Autor: Zhifu Sun, Yan W Asmann, Krishna R Kalari, Brian Bot, Jeanette E Eckel-Passow, Tiffany R Baker, Jennifer M Carr, Irina Khrebtukova, Shujun Luo, Lu Zhang, Gary P Schroth, Edith A Perez, E Aubrey Thompson
Publikováno v: PLoS ONE, Vol 6, Iss 2, p e17490 (2011)
We used deep sequencing technology to profile the transcriptome, gene copy number, and CpG island methylation status simultaneously in eight commonly used breast cell lines to develop a model for how these genomic features are integrated in estrogen
Externí odkaz: https://doaj.org/article/136011bdbb994284ba2dd999ab454605
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