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Autor:
Anderson, IJ, DasSarma, P, Lucas, S, Copeland, A, Lapidus, A, Del Rio, TG, Tice, H, Dalin, E, Bruce, DC, Goodwin, L, Pitluck, S, Sims, D, Brettin, TS, Detter, JC, Han, CS, Larimer, F, Hauser, L, Land, M, Ivanova, N, Richardson, P, Cavicchioli, R, DasSarma, S, Woese, CR, Kyrpides, NC
Publikováno v:
Anderson, IJ; DasSarma, P; Lucas, S; Copeland, A; Lapidus, A; Del Rio, TG; et al.(2016). Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. Standards in Genomic Sciences, 11(1). doi: 10.1186/s40793-016-0194-2. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6m53g9d2
© 2016 The Author(s). Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly re
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http://www.escholarship.org/uc/item/6m53g9d2
http://www.escholarship.org/uc/item/6m53g9d2
Autor:
Göker, M, Lu, M, Fiebig, A, Nolan, M, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Mayilraj, S, Rohde, M, Detter, JC, Bunk, B, Spring, S, Wirth, R, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP
Publikováno v:
Göker, M; Lu, M; Fiebig, A; Nolan, M; Lapidus, A; Tice, H; et al.(2015). Genome sequence of the muddwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences, 9(3), 1076-1088. doi: 10.4056/sigs.5138968. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/3wc5t8bq
Methanoplanus limicola Wildgruber et al. 1984 is a mesophilic methanogen that was isolated from a swamp composed of drilling waste near Naples, Italy, shortly after the Archaea were recognized as a separate domain of life. Methanoplanus is the type g
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http://www.escholarship.org/uc/item/3wc5t8bq
http://www.escholarship.org/uc/item/3wc5t8bq
Autor:
Anderson, I, Teshima, H, Nolan, M, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Lang, E, Detter, JC, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP
Publikováno v:
Anderson, I; Teshima, H; Nolan, M; Lapidus, A; Tice, H; Del Rio, TG; et al.(2013). Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences, 9(1), 83-92. doi: 10.4056/sigs.4338002. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/0rj32607
Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily tar-geted for non-type strain genome sequencing. Strain Kondô 67Twas initially
Externí odkaz:
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http://www.escholarship.org/uc/item/0rj32607
http://www.escholarship.org/uc/item/0rj32607
Autor:
Palaniappan, K, Meier-Kolthoff, JP, Teshima, H, Nolan, M, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Rohde, M, Mayilraj, S, Spring, S, Detter, JC, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Woyke, T
Publikováno v:
Palaniappan, K; Meier-Kolthoff, JP; Teshima, H; Nolan, M; Lapidus, A; Tice, H; et al.(2013). Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences, 9(1), 57-70. doi: 10.4056/sigs.4237901. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/4pq3d6kn
Thermanaerovibrio velox Zavarzina et al. 2000 is a member of the Synergistaceae, a family in the phylum Synergistetes that is already well-characterized at the genome level. Members of this phylum were described as Gram-negative staining anaerobic ba
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http://www.escholarship.org/uc/item/4pq3d6kn
Autor:
Tindall, BJ, Sikorski, J, Lucas, S, Goltsman, E, Copeland, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Han, C, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Fähnrich, R, Goodwin, L, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Lapidus, A
Publikováno v:
Tindall, BJ; Sikorski, J; Lucas, S; Goltsman, E; Copeland, A; del Rio, TG; et al.(2010). Complete genome sequence of Meiothermus ruber type strain (21 T). Standards in Genomic Sciences, 3(1), 26-36. doi: 10.4056/sigs.1032748. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/9tt3438x
Meiothermus ruber (Loginova et al. 1984) Nobre et al. 1996 is the type species of the genus Meiothermus. This thermophilic genus is of special interest, as its members share relatively low degrees of 16S rRNA gene sequence similarity and constitute a
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http://www.escholarship.org/uc/item/9tt3438x
Autor:
Munk, C, Lapidus, A, Copeland, A, Jando, M, Mayilraj, S, del Rio, TG, Nolan, M, Chen, F, Lucas, S, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Goodwin, L, Chain, P, Pitluck, S, Göker, M, Ovchinikova, G, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP
Publikováno v:
Munk, C; Lapidus, A; Copeland, A; Jando, M; Mayilraj, S; del Rio, TG; et al.(2009). Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21 T). Standards in Genomic Sciences, 1(3), 292-299. doi: 10.4056/sigs.47643. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/7qq9c0ns
Stackebrandtia nassauensis Labeda and Kroppenstedt (2005) is the type species of the genus Stackebrandtia, and a member of the actinobacterial family Glycomycetaceae. Stackebrandtia currently contains two species, which are differentiated from Glycom
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http://www.escholarship.org/uc/item/7qq9c0ns
http://www.escholarship.org/uc/item/7qq9c0ns
Autor:
Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Chain, P
Publikováno v:
Malfatti, S; Tindall, BJ; Schneider, S; Fähnrich, R; Lapidus, A; LaButtii, K; et al.(2009). Complete genome sequence of Halogeometricum borinquense type strain (PR3T). Standards in Genomic Sciences, 1(2), 150-158. doi: 10.4056/sigs.23264. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/1wc160x7
© 2009, BioMed Central Ltd. Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the ge-nus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcin
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http://www.escholarship.org/uc/item/1wc160x7
Autor:
Cheng, J.-F., Tighe, D., Robinson, D., Hack, C., Hamilton, M., Chow, J., Tice, H., Peng, Z., Lucas, S.
Publikováno v:
Cheng, J.-F.; Tighe, D.; Robinson, D.; Hack, C.; Hamilton, M.; Chow, J.; et al.(2008). Process Optimization in Production. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/34k5f1ww
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http://www.escholarship.org/uc/item/34k5f1ww
http://www.escholarship.org/uc/item/34k5f1ww
Autor:
Daum, C., Roberts, S., Cheng, J.-F., Zane, M., Tarver, A., Shapiro, N., Kennedy, M., Lail, K., Harmon-Smith, M., Tice, H., Lucas, S.
Publikováno v:
Daum, C.; Roberts, S.; Cheng, J.-F.; Zane, M.; Tarver, A.; Shapiro, N.; et al.(2008). Sanger, 454 and Illumina Production Lines. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/6xd4d6sr
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http://www.escholarship.org/uc/item/6xd4d6sr
http://www.escholarship.org/uc/item/6xd4d6sr