Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Tiago Grego"'
Autor:
Tiago Grego, Francisco M Couto
Publikováno v:
PLoS ONE, Vol 8, Iss 5, p e62984 (2013)
With the amount of chemical data being produced and reported in the literature growing at a fast pace, it is increasingly important to efficiently retrieve this information. To tackle this issue text mining tools have been applied, but despite their
Externí odkaz:
https://doaj.org/article/1063b1f8c471430a97f015881c8cca3f
Autor:
Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Gustavo A Salazar, Maxwell L Bileschi, Peer Bork, Alan Bridge, Lucy Colwell, Julian Gough, Daniel H Haft, Ivica Letunić, Aron Marchler-Bauer, Huaiyu Mi, Darren A Natale, Christine A Orengo, Arun P Pandurangan, Catherine Rivoire, Christian J A Sigrist, Ian Sillitoe, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Cathy H Wu, Alex Bateman
Publikováno v:
Nucleic Acids Research. 51:D418-D427
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (v
Autor:
Fabio C. P. Navarro, Jonathan M. Mudge, S. Mohanan, Adam Frankish, Joel Armstrong, Tiago Grego, Irwin Jungreis, Roderic Guigó, Jinrui Xu, Benedict Paten, Cristina Sisu, Daniel R. Zerbino, Julien Lagarde, Mark Diekhans, José M. González, Michael L. Tress, E. Stapleton, Osagie G. Izuogu, Mark Gerstein, Ian T. Fiddes, Toby Hunt, Sarah Donaldson, Marie Marthe Suner, Fernando Pozo, Andrew D. Yates, S. Carbonell Sala, T. Di Domenico, Matthew Hardy, Barbara Uszczynska-Ratajczak, Fiona Cunningham, Andrew Berry, Anne Parker, Laura Martinez, Alexandra Bignell, Bianca M. Schmitt, Yan Zhang, Jane E. Loveland, Baikang Pei, Jyoti S. Choudhary, F. C. Riera, Paul R. Muir, C. Garcia Giron, Tim Hubbard, Fergal J. Martin, Rory Johnson, Magali Ruffier, If Barnes, James C. Wright, I. Sycheva, Manolis Kellis, Carles Boix, Thibaut Hourlier, Paul Flicek, Maxim Y Wolf, Y. T. Yang, Kerstin Howe
Publikováno v:
Frankish, Adam; Diekhans, Mark; Jungreis, Irwin; Lagarde, Julien; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Carbonell Sala, Silvia; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; Gonzalez, Jose Manuel; ... (2021). GENCODE 2021. Nucleic acids research, 49(D1), D916-D923. Oxford University Press 10.1093/nar/gkaa1087
Nucleic Acids Research
Nucleic Acids Research
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. The GENCODE project annotates human and mouse genes and transcripts supported by experimental data with high accuracy, providing a foundational resource
Autor:
Kevin L Howe, Premanand Achuthan, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Andrey G Azov, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Mehrnaz Charkhchi, Carla Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Dodiya, Bilal El Houdaigui, Reham Fatima, Astrid Gall, Carlos Garcia Giron, Tiago Grego, Cristina Guijarro-Clarke, Leanne Haggerty, Anmol Hemrom, Thibaut Hourlier, Osagie G Izuogu, Thomas Juettemann, Vinay Kaikala, Mike Kay, Ilias Lavidas, Tuan Le, Diana Lemos, Jose Gonzalez Martinez, José Carlos Marugán, Thomas Maurel, Aoife C McMahon, Shamika Mohanan, Benjamin Moore, Matthieu Muffato, Denye N Oheh, Dimitrios Paraschas, Anne Parker, Andrew Parton, Irina Prosovetskaia, Manoj P Sakthivel, Ahamed I Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Emily Steed, Michal Szpak, Marek Szuba, Kieron Taylor, Anja Thormann, Glen Threadgold, Brandon Walts, Andrea Winterbottom, Marc Chakiachvili, Ameya Chaubal, Nishadi De Silva, Bethany Flint, Adam Frankish, Sarah E Hunt, Garth R IIsley, Nick Langridge, Jane E Loveland, Fergal J Martin, Jonathan M Mudge, Joanella Morales, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J Trevanion, Fiona Cunningham, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Publikováno v:
Nucleic Acids Research
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomic
Autor:
Fiona Cunningham, Premanand Achuthan, Wasiu Akanni, James Allen, M Ridwan Amode, Irina M Armean, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Carla Cummins, Claire Davidson, Kamalkumar Jayantilal Dodiya, Astrid Gall, Carlos García Girón, Laurent Gil, Tiago Grego, Leanne Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G Izuogu, Sophie H Janacek, Thomas Juettemann, Mike Kay, Matthew R Laird, Ilias Lavidas, Zhicheng Liu, Jane E Loveland, José C Marugán, Thomas Maurel, Aoife C McMahon, Benjamin Moore, Joannella Morales, Jonathan M Mudge, Michael Nuhn, Denye Ogeh, Anne Parker, Andrew Parton, Mateus Patricio, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Helen Sparrow, Eloise Stapleton, Marek Szuba, Kieron Taylor, Glen Threadgold, Anja Thormann, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Adam Frankish, Sarah E Hunt, Myrto Kostadima, Nick Langridge, Fergal J Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M Staines, Stephen J Trevanion, Bronwen L Aken, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Publikováno v:
Nucleic Acids Research
The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining and updating
Autor:
Narmada Thanki, Silvio C. E. Tosatto, Ian Sillitoe, Lowri Williams, Swaathi Kandasaamy, Ivica Letunic, Sara Chuguransky, Matloob Qureshi, Matthias Blum, Robert D. Finn, Typhaine Paysan-Lafosse, Arun Prasad Pandurangan, Christian J. A. Sigrist, Marco Necci, Paul Thomas, Hsin-Yu Chang, Aron Marchler-Bauer, Huaiyu Mi, Peer Bork, Alex Bateman, Gift Nuka, Catherine Rivoire, Shriya Raj, Lorna Richardson, Daniel H. Haft, Gustavo A. Salazar, Tiago Grego, Julian Gough, Cathy H. Wu, Alan Bridge, Darren A. Natale, Alex L. Mitchell, Christine A. Orengo
Publikováno v:
Nucleic Acids Research
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. InterProScan is the underlying software that allows
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5a52bbcb2483c8134a786cb2653dd19
http://hdl.handle.net/11577/3364881
http://hdl.handle.net/11577/3364881
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od______2659::92dd3b62513cd8b4c68666de9d24498b
https://zenodo.org/record/7688906
https://zenodo.org/record/7688906
Autor:
Rory Johnson, Fernando Pozo, Andrew D. Yates, Magali Ruffier, Alexandra Bignell, Anne Parker, Adam Frankish, Osagie G. Izuogu, If Barnes, Jose Manuel Gonzalez, Tomás Di Domenico, Irwin Jungreis, Cristina Sisu, Fergal J. Martin, Anne-Maud Ferreira, Paul R. Muir, Benedict Paten, Matthew P. Hardy, Manolis Kellis, Jacqueline Chrast, Jane E. Loveland, Yan Zhang, Michael L. Tress, Fabio C. P. Navarro, Barbara Uszczynska-Ratajczak, Jonathan M. Mudge, Mark Diekhans, Shamika Mohanan, James C. Wright, Fiona Cunningham, Toby Hunt, Baikang Pei, Jinuri Xu, Tim Hubbard, Julien Lagarde, Roderic Guigó, Alexandre Reymond, Silvia Carbonell Sala, Bianca M. Schmitt, Sarah Donaldson, Mark Gerstein, Jyoti S. Choudhary, Eloise Stapleton, Bronwen Aken, Laura Martinez, Tiago Grego, Ian T. Fiddes, Joel Armstrong, Carlos García Girón, Marie-Marthe Suner, Paul Flicek, Andrew Berry, Irina Sycheva, Thibaut Hourlier, Daniel R. Zerbino
Publikováno v:
Frankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory Baldwin; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Carbonell Sala, Silvia; Chrast, Jacqueline; Cunningham, Fiona; Di Domenico, Tomás; Donaldson, Sarah; Fiddes, Ian T; García Girón, Carlos; ... (2019). GENCODE reference annotation for the human and mouse genomes. Nucleic acids research, 47(D1), D766-D773. Oxford University Press 10.1093/nar/gky955
Repisalud
Instituto de Salud Carlos III (ISCIII)
Recercat. Dipósit de la Recerca de Catalunya
instname
Nucleic Acids Research
Nucleic acids research, vol. 47, no. D1, pp. D766-D773
Repisalud
Instituto de Salud Carlos III (ISCIII)
Recercat. Dipósit de la Recerca de Catalunya
instname
Nucleic Acids Research
Nucleic acids research, vol. 47, no. D1, pp. D766-D773
The accurate identification and description of the genes in the human and mouse genomes is a fundamental requirement for high quality analysis of data informing both genome biology and clinical genomics. Over the last 15 years, the GENCODE consortium
Autor:
William C. Skarnes, Sajith Perera, Roxana C. Mustata, Katie Tremble, José C. R. Silva, Tiago Grego, Katie Andrews, Jihoon Kim, Juergen Fink, Alessandra Merenda, Bon-Kyoung Koo, Amanda Andersson-Rolf
Publikováno v:
Nature methods
Loss-of-function studies are key for investigating gene function, and CRISPR technology has made genome editing widely accessible in model organisms and cells. However, conditional gene inactivation in diploid cells is still difficult to achieve. Her
Autor:
Alex Hodgkins, Sajith Perera, Vivek Iyer, Tiago Grego, David J. Parry-Smith, William C. Skarnes, Anna Farne
Publikováno v:
Bioinformatics
Summary: The rapid development of CRISPR-Cas9 mediated genome editing techniques has given rise to a number of online and stand-alone tools to find and score CRISPR sites for whole genomes. Here we describe the Wellcome Trust Sanger Institute Genome