Zobrazeno 1 - 10
of 200
pro vyhledávání: '"Thorsten Stoeck"'
Publikováno v:
Environmental DNA, Vol 6, Iss 5, Pp n/a-n/a (2024)
ABSTRACT The marine aquaculture industry and regulators are in the process of implementing environmental DNA (eDNA) metabarcoding of microbial communities for compliance monitoring. This requires standardization of sampling, laboratory, and data anal
Externí odkaz:
https://doaj.org/article/363937aba8084b19888b182e310f3774
Publikováno v:
Metabarcoding and Metagenomics, Vol 8, Iss , Pp 45-68 (2024)
Oxford Nanopore Technologies has recently launched a duplex sequencing strategy and announced an improved error rate which is in a similar order of magnitude as Illumina sequencing. We therefore conducted a pilot study to assess whether Nanopore dupl
Externí odkaz:
https://doaj.org/article/ab8db4960d014f7a97a78233475756cc
Publikováno v:
PeerJ, Vol 11, p e15425 (2023)
Organic enrichment associated with marine finfish aquaculture is a local stressor of marine coastal ecosystems. To maintain ecosystem services, the implementation of biomonitoring programs focusing on benthic diversity is required. Traditionally, imp
Externí odkaz:
https://doaj.org/article/f76bfed17d514842b4422f2b3676c10f
Autor:
Thomas Pröschold, Daniel Rieser, Tatyana Darienko, Laura Nachbaur, Barbara Kammerlander, Kuimei Qian, Gianna Pitsch, Estelle Patricia Bruni, Zhishuai Qu, Dominik Forster, Cecilia Rad-Menendez, Thomas Posch, Thorsten Stoeck, Bettina Sonntag
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-19 (2021)
Abstract Species of the genus Coleps are one of the most common planktonic ciliates in lake ecosystems. The study aimed to identify the phenotypic plasticity and genetic variability of different Coleps isolates from various water bodies and from cult
Externí odkaz:
https://doaj.org/article/9c21a8fa169843108356cd0219c764bf
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 2256-2268 (2021)
Environmental DNA metabarcoding is a powerful approach for use in biomonitoring and impact assessments. Amplicon-based eDNA sequence data are characteristically highly divergent in sequencing depth (total reads per sample) as influenced inter alia by
Externí odkaz:
https://doaj.org/article/5f572ab766e04b9f8dd246b3aa0683c0
Autor:
Daniela Frantal, Sabine Agatha, Daniela Beisser, Jens Boenigk, Tatyana Darienko, Gianna Dirren-Pitsch, Sabine Filker, Michael Gruber, Barbara Kammerlander, Laura Nachbaur, Ulrike Scheffel, Thorsten Stoeck, Kuimei Qian, Birgit Weißenbacher, Thomas Pröschold, Bettina Sonntag
Publikováno v:
Frontiers in Microbiology, Vol 12 (2022)
Species of the ciliate genus Urotricha are key players in freshwater plankton communities. In the pelagial of lakes, about 20 urotrich species occur throughout an annual cycle, some of which play a pivotal role in aquatic food webs. For example, duri
Externí odkaz:
https://doaj.org/article/cf1d8b1a6b564a7686f6516e69f4ae74
Autor:
Nikola Hanžek, Marija Gligora Udovič, Katarina Kajan, Gábor Borics, Gábor Várbíró, Thorsten Stoeck, Petar Žutinić, Sandi Orlić, Igor Stanković
Publikováno v:
Ecological Indicators, Vol 131, Iss , Pp 108166- (2021)
Phytoplankton is one of the key Biological Quality Elements within the Water Framework Directive, used to assess the ecological status of surface water bodies. Water samples for phytoplankton identification were collected from April to September at a
Externí odkaz:
https://doaj.org/article/9e7606429c6a4b118983a4674d5941a0
Autor:
Antonija Kulaš, Vesna Gulin, Renata Matoničkin Kepčija, Petar Žutinić, Mirela Sertić Perić, Sandi Orlić, Katarina Kajan, Thorsten Stoeck, Guillaume Lentendu, Ivan Čanjevac, Ivan Martinić, Marija Gligora Udovič
Publikováno v:
Ecological Indicators, Vol 124, Iss , Pp 107430- (2021)
Ciliates are single celled eukaryotes recognized as key players in the microbial loop of aquatic ecosystems. The present study was carried out on the Krka River (Croatia), a karst freshwater ecosystem characterized by tufa barriers, biomineralization
Externí odkaz:
https://doaj.org/article/482643e5373f4de2818c7a9a82ec48b2
Autor:
Maximilian H. Ganser, Dominik Forster, Weiwei Liu, Xiaofeng Lin, Thorsten Stoeck, Sabine Agatha
Publikováno v:
Frontiers in Marine Science, Vol 8 (2021)
Unraveling geographic distribution patterns of planktonic protists is a central goal in marine microbial ecology. Using a novel combination of recently developed phylogenetic and network analyses on a V4 18S rDNA metabarcoding dataset, we here analyz
Externí odkaz:
https://doaj.org/article/7b9f1a479cb941fea2f53d892dc24525
Autor:
Larissa Frühe, Verena Dully, Dominik Forster, Nigel B. Keeley, Olivier Laroche, Xavier Pochon, Shawn Robinson, Thomas A. Wilding, Thorsten Stoeck
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
The analysis of benthic bacterial community structure has emerged as a powerful alternative to traditional microscopy-based taxonomic approaches to monitor aquaculture disturbance in coastal environments. However, local bacterial diversity and commun
Externí odkaz:
https://doaj.org/article/9be08fee538a42f79e57886988859013