Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Thomas S. B. Schmidt"'
Autor:
Jacqueline Wyss, Tina Raselli, Annika Wyss, Anja Telzerow, Gerhard Rogler, Niklas Krupka, Bahtiyar Yilmaz, Thomas S. B. Schmidt, Benjamin Misselwitz
Publikováno v:
BMC Microbiology, Vol 24, Iss 1, Pp 1-15 (2024)
Abstract Liver steatosis is the most frequent liver disorder and its advanced stage, non-alcoholic steatohepatitis (NASH), will soon become the main reason for liver fibrosis and cirrhosis. The “multiple hits hypothesis” suggests that progression
Externí odkaz:
https://doaj.org/article/64a0228787cf4ef0a13a6ec4944cab18
Autor:
Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-19 (2021)
Abstract Genomes are critical units in microbiology, yet ascertaining quality in prokaryotic genome assemblies remains a formidable challenge. We present GUNC (the Genome UNClutterer), a tool that accurately detects and quantifies genome chimerism ba
Externí odkaz:
https://doaj.org/article/34648596e6014e92a141c38319336404
Autor:
Ramiro Logares, Ina M. Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas S. B. Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz-González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramon Massana
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-17 (2020)
Abstract Background The ocean microbiota modulates global biogeochemical cycles and changes in its configuration may have large-scale consequences. Yet, the underlying ecological mechanisms structuring it are unclear. Here, we investigate how fundame
Externí odkaz:
https://doaj.org/article/0882902080b2494280bb1db0b2217f76
Autor:
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Alves, Paul I Costea, Luis Pedro Coelho, Thomas S. B. Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D. Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller, Shinichi Sunagawa
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Metagenomic analysis based on universal phylogenetic marker gene (MG)-based operational taxonomic units (mOTUs) is a useful strategy, especially for microbial species without reference genomes. Here, the authors develop mOTUs2, an updated and functio
Externí odkaz:
https://doaj.org/article/a310312540d94a05b62a9e1f75202c64
Autor:
Sebastien Fromentin, Sofia K. Forslund, Kanta Chechi, Judith Aron-Wisnewsky, Rima Chakaroun, Trine Nielsen, Valentina Tremaroli, Boyang Ji, Edi Prifti, Antonis Myridakis, Julien Chilloux, Petros Andrikopoulos, Yong Fan, Michael T. Olanipekun, Renato Alves, Solia Adiouch, Noam Bar, Yeela Talmor-Barkan, Eugeni Belda, Robert Caesar, Luis Pedro Coelho, Gwen Falony, Soraya Fellahi, Pilar Galan, Nathalie Galleron, Gerard Helft, Lesley Hoyles, Richard Isnard, Emmanuelle Le Chatelier, Hanna Julienne, Lisa Olsson, Helle Krogh Pedersen, Nicolas Pons, Benoit Quinquis, Christine Rouault, Hugo Roume, Joe-Elie Salem, Thomas S. B. Schmidt, Sara Vieira-Silva, Peishun Li, Maria Zimmermann-Kogadeeva, Christian Lewinter, Nadja B. Søndertoft, Tue H. Hansen, Dominique Gauguier, Jens Peter Gøtze, Lars Køber, Ran Kornowski, Henrik Vestergaard, Torben Hansen, Jean-Daniel Zucker, Serge Hercberg, Ivica Letunic, Fredrik Bäckhed, Jean-Michel Oppert, Jens Nielsen, Jeroen Raes, Peer Bork, Michael Stumvoll, Eran Segal, Karine Clément, Marc-Emmanuel Dumas, S. Dusko Ehrlich, Oluf Pedersen
Publikováno v:
Nature Medicine
Nature Medicine, 2022, 28 (2), pp.303-314. ⟨10.1038/s41591-022-01688-4⟩
Nature Medicine, Nature Publishing Group, 2022, 28 (2), pp.303-314. ⟨10.1038/s41591-022-01688-4⟩
Fromentin, S, Forslund, S K, Chechi, K, Aron-Wisnewsky, J, Chakaroun, R, Nielsen, T, Tremaroli, V, Ji, B, Prifti, E, Myridakis, A, Chilloux, J, Andrikopoulos, P, Fan, Y, Olanipekun, M T, Alves, R, Adiouch, S, Bar, N, Talmor-Barkan, Y, Belda, E, Caesar, R, Coelho, L P, Falony, G, Fellahi, S, Galan, P, Galleron, N, Helft, G, Hoyles, L, Isnard, R, Le Chatelier, E, Julienne, H, Olsson, L, Pedersen, H K, Pons, N, Quinquis, B, Rouault, C, Roume, H, Salem, J E, Schmidt, T S B, Vieira-Silva, S, Li, P, Zimmermann-Kogadeeva, M, Lewinter, C, Søndertoft, N B, Hansen, T H, Gauguier, D, Gøtze, J P, Køber, L, Kornowski, R, Vestergaard, H, Hansen, T, Zucker, J D, Hercberg, S, Letunic, I, Bäckhed, F, Oppert, J M, Nielsen, J, Raes, J, Bork, P, Stumvoll, M, Segal, E, Clément, K, Dumas, M E, Ehrlich, S D & Pedersen, O 2022, ' Microbiome and metabolome features of the cardiometabolic disease spectrum ', Nature Medicine, vol. 28, no. 2, pp. 303-314 . https://doi.org/10.1038/s41591-022-01688-4
Nature Medicine, 2022, 28 (2), pp.303-314. ⟨10.1038/s41591-022-01688-4⟩
Nature Medicine, Nature Publishing Group, 2022, 28 (2), pp.303-314. ⟨10.1038/s41591-022-01688-4⟩
Fromentin, S, Forslund, S K, Chechi, K, Aron-Wisnewsky, J, Chakaroun, R, Nielsen, T, Tremaroli, V, Ji, B, Prifti, E, Myridakis, A, Chilloux, J, Andrikopoulos, P, Fan, Y, Olanipekun, M T, Alves, R, Adiouch, S, Bar, N, Talmor-Barkan, Y, Belda, E, Caesar, R, Coelho, L P, Falony, G, Fellahi, S, Galan, P, Galleron, N, Helft, G, Hoyles, L, Isnard, R, Le Chatelier, E, Julienne, H, Olsson, L, Pedersen, H K, Pons, N, Quinquis, B, Rouault, C, Roume, H, Salem, J E, Schmidt, T S B, Vieira-Silva, S, Li, P, Zimmermann-Kogadeeva, M, Lewinter, C, Søndertoft, N B, Hansen, T H, Gauguier, D, Gøtze, J P, Køber, L, Kornowski, R, Vestergaard, H, Hansen, T, Zucker, J D, Hercberg, S, Letunic, I, Bäckhed, F, Oppert, J M, Nielsen, J, Raes, J, Bork, P, Stumvoll, M, Segal, E, Clément, K, Dumas, M E, Ehrlich, S D & Pedersen, O 2022, ' Microbiome and metabolome features of the cardiometabolic disease spectrum ', Nature Medicine, vol. 28, no. 2, pp. 303-314 . https://doi.org/10.1038/s41591-022-01688-4
Previous microbiome and metabolome analyses exploring non-communicable diseases have paid scant attention to major confounders of study outcomes, such as common, pre-morbid and co-morbid conditions, or polypharmacy. Here, in the context of ischemic h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b8932536b966832eecdb3ba0880f4cc
https://irep.ntu.ac.uk/id/eprint/45252/1/1507283_Hoyles.pdf
https://irep.ntu.ac.uk/id/eprint/45252/1/1507283_Hoyles.pdf
Autor:
Thomas S. B. Schmidt, Simone S. Li, Oleksandr M. Maistrenko, Wasiu Akanni, Luis Pedro Coelho, Sibasish Dolai, Anthony Fullam, Anna M. Glazek, Rajna Hercog, Hilde Herrema, Ferris Jung, Stefanie Kandels, Askarbek Orakov, Roman Thielemann, Moritz von Stetten, Thea Van Rossum, Vladimir Benes, Thomas J. Borody, Willem M. de Vos, Cyriel Y. Ponsioen, Max Nieuwdorp, Peer Bork
Publikováno v:
Nature Medicine 28 (2022) 9
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, Van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature medicine, 28(9), 1902-1912. Nature Publishing Group
Schmidt, T S B, Li, S S, Maistrenko, O M, Akanni, W, Coelho, L P, Dolai, S, Fullam, A, Glazek, A M, Hercog, R, Herrema, H, Jung, F, Kandels, S, Orakov, A, Thielemann, R, von Stetten, M, van Rossum, T, Benes, V, Borody, T J, de Vos, W M, Ponsioen, C Y, Nieuwdorp, M & Bork, P 2022, ' Drivers and determinants of strain dynamics following fecal microbiota transplantation ', Nature Medicine, vol. 28, no. 9, pp. 1902-1912 . https://doi.org/10.1038/s41591-022-01913-0
Nature Medicine, 28(9), 1902-1912. Nature Publishing Group
Nature Medicine, 28(9), 1902-1912
Fecal microbiota transplantation (FMT) is a therapeutic intervention for inflammatory diseases of the gastrointestinal tract, but its clinical mode of action and subsequent microbiome dynamics remain poorly understood. Here we analyzed metagenomes fr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f09ad90a73d39d876c5bd9ef143f308
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
https://research.wur.nl/en/publications/drivers-and-determinants-of-strain-dynamics-following-fecal-micro
Autor:
Anthony Fullam, Ivica Letunic, Thomas S B Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R Mende
Publikováno v:
Nucleic acids research, 51(D1), D760-D766. Oxford University Press
Nucleic Acids Research, 51 (D1)
Nucleic Acids Research, 51 (D1)
7 Pág.
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96ceca1546f3e14bdfc0586a783af884
https://www.vliz.be/imisdocs/publications/34/386734.pdf
https://www.vliz.be/imisdocs/publications/34/386734.pdf
Publikováno v:
PLoS Computational Biology, Vol 10, Iss 4, p e1003594 (2014)
Operational Taxonomic Units (OTUs), usually defined as clusters of similar 16S/18S rRNA sequences, are the most widely used basic diversity units in large-scale characterizations of microbial communities. However, it remains unclear how well the vari
Externí odkaz:
https://doaj.org/article/3867438c7c87465b9af52d0eb696c84b