Zobrazeno 1 - 10
of 31
pro vyhledávání: '"Thomas, Madej"'
Autor:
Jiyao Wang, Philippe Youkharibache, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Shennan Lu, Thomas Madej, Gabriele H. Marchler, Tiejun Cheng, Li Chuin Chong, Sarah Zhao, Kevin Yang, Jack Lin, Zhiyu Cheng, Rachel Dunn, Sridhar Acharya Malkaram, Chin-Hsien Tai, David Enoma, Ben Busby, Nicholas L. Johnson, Francesco Tabaro, Guangfeng Song, Yuchen Ge
Publikováno v:
Frontiers in Molecular Biosciences, Vol 9 (2022)
iCn3D was initially developed as a web-based 3D molecular viewer. It then evolved from visualization into a full-featured interactive structural analysis software. It became a collaborative research instrument through the sharing of permanent, shorte
Externí odkaz:
https://doaj.org/article/d5688f6755434832b02f6357c8fbb4eb
Autor:
Jiyao Wang, Thomas Madej, Philippe Youkharibache, Dachuan Zhang, Christopher Lanczycki, Shennan Lu, Gabriele Marchler, Mingzhang Yang, Aron Marchler-Bauer
Publikováno v:
Journal of Biological Chemistry. 299:103422
Publikováno v:
bioRxiv
The COVID-19 pandemic took us ill-prepared and tackling the many challenges it poses in a timely manner requires world-wide collaboration. Our ability to study the SARS-COV-2 virus and its interactions with its human host in molecular terms efficient
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2afbcf6d332359aa531c87ec9d17af03
https://doi.org/10.1101/2020.07.01.182964
https://doi.org/10.1101/2020.07.01.182964
Autor:
Thomas, Madej, Aron, Marchler-Bauer, Christopher, Lanczycki, Dachuan, Zhang, Stephen H, Bryant
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2112
The VAST+ algorithm is an efficient, simple, and elegant solution to the problem of comparing the atomic structures of biological assemblies. Given two protein assemblies, it takes as input all the pairwise structural alignments of the component prot
Autor:
Manoj Tyagi, Ratna R Thangudu, Dachuan Zhang, Stephen H Bryant, Thomas Madej, Anna R Panchenko
Publikováno v:
PLoS ONE, Vol 7, Iss 1, p e28896 (2012)
The coverage and reliability of protein-protein interactions determined by high-throughput experiments still needs to be improved, especially for higher organisms, therefore the question persists, how interactions can be verified and predicted by com
Externí odkaz:
https://doaj.org/article/3ab1ac73cac24d2bba3cd6617030b1b1
Autor:
Stephen H. Bryant, Dachuan Zhang, Yanli Wang, Philippe Youkharibache, Renata C. Geer, Christopher J. Lanczycki, Gabriele H. Marchler, Lewis Y. Geer, Jiyao Wang, Lon Phan, Shennan Lu, Thomas Madej, Minghong Ward, Aron Marchler-Bauer
SummaryiCn3D (I-see-in-3D) is a web-based 3D molecular structure viewer focusing on the interactive structural analysis. It can simultaneously show 3D structure, 2D molecular contacts, and 1D protein and nucleotide sequences through an integrated seq
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4e83e8d76416eff56cc2e4bf864aab7
https://doi.org/10.1101/501692
https://doi.org/10.1101/501692
Autor:
Renata C. Geer, Aron Marchler-Bauer, Paul A. Thiessen, Christopher J. Lanczycki, Stephen H. Bryant, Dachuan Zhang, Thomas Madej
Publikováno v:
Nucleic Acids Research
The computational detection of similarities between protein 3D structures has become an indispensable tool for the detection of homologous relationships, the classification of protein families and functional inference. Consequently, numerous algorith
Publikováno v:
Journal of Molecular Biology. 415(2):443-453
The modulation of protein–protein interactions (PPIs) by small drug-like molecules is a relatively new area of research and has opened up new opportunities in drug discovery. However, the progress made in this area is limited to a handful of known
Autor:
Ratna R. Thangudu, Aron Marchler-Bauer, Jessica H. Fong, Dachuan Zhang, Anna R. Panchenko, Manoj Tyagi, Benjamin A. Shoemaker, Thomas Madej, Stephen H. Bryant
Publikováno v:
Nucleic Acids Research
We have recently developed the Inferred Biomolecular Interaction Server (IBIS) and database, which reports, predicts and integrates different types of interaction partners and locations of binding sites in proteins based on the analysis of homologous
Autor:
Chunlei Liu, Renata C. Geer, Kenneth J. Addess, Anna R. Panchenko, Lewis Y. Geer, Thomas Madej, Stephen H. Bryant, Aron Marchler-Bauer, Christopher J. Lanczycki, Shennan Lu, Jie Chen, Jessica H. Fong, Dachuan Zhang, Yanli Wang, Paul A. Thiessen
Publikováno v:
Nucleic Acids Research
Close to 60% of protein sequences tracked in comprehensive databases can be mapped to a known three-dimensional (3D) structure by standard sequence similarity searches. Potentially, a great deal can be learned about proteins or protein families of in