Zobrazeno 1 - 10
of 201
pro vyhledávání: '"Thomas, Burger"'
Autor:
David Pérez Compte, Lucas Etourneau, Anne-Marie Hesse, Alexandra Kraut, Justine Barthelon, Nathalie Sturm, Hélène Borges, Salomé Biennier, Marie Courçon, Marc de Saint Loup, Victoria Mignot, Charlotte Costentin, Thomas Burger, Yohann Couté, Christophe Bruley, Thomas Decaens, Michel Jaquinod, Jérôme Boursier, Virginie Brun
Publikováno v:
Biomarker Research, Vol 12, Iss 1, Pp 1-11 (2024)
Abstract Background Metabolic dysfunction-associated steatotic liver disease (MASLD) is estimated to affect 30% of the world’s population, and its prevalence is increasing in line with obesity. Liver fibrosis is closely related to mortality, making
Externí odkaz:
https://doaj.org/article/6c98c2243d174feea3990c7c0db09abe
Autor:
Florentin Pastor, Emilie Charles, Lucid Belmudes, Hélène Chabrolles, Marion Cescato, Michel Rivoire, Thomas Burger, Guillaume Passot, David Durantel, Julie Lucifora, Yohann Couté, Anna Salvetti
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
Phosphorylation is a major post-translation modification (PTM) of proteins which is finely tuned by the activity of several hundred kinases and phosphatases. It controls most if not all cellular pathways including anti-viral responses. Accordingly, v
Externí odkaz:
https://doaj.org/article/3bbead2920a8416c931a889020d4c95f
Autor:
Thomas Burger
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-3 (2024)
Selecting omic biomarkers using both their effect size and their differential status significance (i.e., selecting the “volcano-plot outer spray”) has long been equally biologically relevant and statistically troublesome. However, recent proposal
Externí odkaz:
https://doaj.org/article/81fd53b7492d482aa4f618e341d40052
Autor:
Laura Fancello, Thomas Burger
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-23 (2022)
Abstract Background Proteogenomics aims to identify variant or unknown proteins in bottom-up proteomics, by searching transcriptome- or genome-derived custom protein databases. However, empirical observations reveal that these large proteogenomic dat
Externí odkaz:
https://doaj.org/article/c152e2f36f454c0a96e70402cff3997a
Autor:
Alyssa Imbert, Magali Rompais, Mohammed Selloum, Florence Castelli, Emmanuelle Mouton-Barbosa, Marion Brandolini-Bunlon, Emeline Chu-Van, Charlotte Joly, Aurélie Hirschler, Pierrick Roger, Thomas Burger, Sophie Leblanc, Tania Sorg, Sadia Ouzia, Yves Vandenbrouck, Claudine Médigue, Christophe Junot, Myriam Ferro, Estelle Pujos-Guillot, Anne Gonzalez de Peredo, François Fenaille, Christine Carapito, Yann Herault, Etienne A. Thévenot
Publikováno v:
Scientific Data, Vol 8, Iss 1, Pp 1-14 (2021)
Measurement(s) preclinical phenotype • protein expression profiling • metabolite profiling Technology Type(s) phenotyping tests • mass spectrometry assay Factor Type(s) genotype • sex Sample Characteristic - Organism Mus musculus Machine-acce
Externí odkaz:
https://doaj.org/article/38b5e44d0141472391333021e305577b
Autor:
Olga Permiakova, Romain Guibert, Alexandra Kraut, Thomas Fortin, Anne-Marie Hesse, Thomas Burger
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-30 (2021)
Abstract Background The clustering of data produced by liquid chromatography coupled to mass spectrometry analyses (LC-MS data) has recently gained interest to extract meaningful chemical or biological patterns. However, recent instrumental pipelines
Externí odkaz:
https://doaj.org/article/09ef442cca6e4bf58b38e9b9338b97f7
Autor:
Thomas Burger
Publikováno v:
Journal of Proteome Research
Journal of Proteome Research, 2022, ⟨10.1021/acs.jproteome.2c00161⟩
Journal of Proteome Research, 2022, ⟨10.1021/acs.jproteome.2c00161⟩
In their recent review (
Publikováno v:
Schweizerische Zeitschrift fur Forstwesen. 173:64-73
Die Nährstoffausstattung des Oberbodens ist für die Vitalität und das Wachstum der Waldbäume entscheidend. Die seit Jahrzehnten hohen Stickstoffeinträge in die Wälder führen zu Eutrophierung. Gleichzeitig verarmt der Boden an wichtigen Nährst
Autor:
Véronique, Dupierris, Anne-Marie, Hesse, Jean-Philippe, Menetrey, David, Bouyssié, Thomas, Burger, Yohann, Couté, Christophe, Bruley
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2426
In the proteomics field, the production and publication of reliable mass spectrometry (MS)-based label-free quantitative results is a major concern. Due to the intrinsic complexity of bottom-up proteomics experiments (requiring aggregation of data re
Autor:
Thomas Burger, Lucas Etourneau
Publikováno v:
Journal of Proteome Research
Journal of Proteome Research, In press
Journal of Proteome Research, In press
International audience; In their recent article, Madej et al. 1 proposed an original way to solve the recurrent issue of controlling for the false discovery rate (FDR) in peptide-spectrum-match (PSM) validation. Briefly, they proposed to derive a sin