MorphoGraphX: A platform for quantifying morphogenesis in 4D

Autor: Pierre Barbier de Reuille, Anne-Lise Routier-Kierzkowska, Daniel Kierzkowski, George W Bassel, Thierry Schüpbach, Gerardo Tauriello, Namrata Bajpai, Sören Strauss, Alain Weber, Annamaria Kiss, Agata Burian, Hugo Hofhuis, Aleksandra Sapala, Marcin Lipowczan, Maria B Heimlicher, Sarah Robinson, Emmanuelle M Bayer, Konrad Basler, Petros Koumoutsakos, Adrienne HK Roeder, Tinri Aegerter-Wilmsen, Naomi Nakayama, Miltos Tsiantis, Angela Hay, Dorota Kwiatkowska, Ioannis Xenarios, Cris Kuhlemeier, Richard S Smith

Publikováno v: eLife, Vol 4 (2015)

Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually perf

Externí odkaz: https://doaj.org/article/cd8b2bcdd6234c9186eb0cc248d43615

FastEpistasis: a high performance computing solution for quantitative trait epistasis

Autor: Karen Kapur, Sven Bergmann, Thierry Schüpbach, Ioannis Xenarios

Publikováno v: Bioinformatics, vol. 26, no. 11, pp. 1468-1469
Bioinformatics

Motivation: Genome-wide association studies have become widely used tools to study effects of genetic variants on complex diseases. While it is of great interest to extend existing analysis methods by considering interaction effects between pairs of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b31ab192739f8c78057326d92485c92
http://doc.rero.ch/record/304922/files/btq147.pdf

MorphoGraphX : a platform for quantifying morphogenesis in 4D

Autor: Annamaria Kiss, Namrata Bajpai, Ioannis Xenarios, Konrad Basler, Richard S. Smith, Marcin Lipowczan, Anne-Lise Routier-Kierzkowska, Thierry Schüpbach, Sarah Robinson, Sören Strauss, Pierre Barbier de Reuille, Petros Koumoutsakos, Cris Kuhlemeier, Aleksandra Sapala, Angela Hay, Miltos Tsiantis, Emmanuelle Bayer, Agata Burian, Gerardo Tauriello, Tinri Aegerter-Wilmsen, Naomi Nakayama, Maria B. Heimlicher, Adrienne H. K. Roeder, Dorota Kwiatkowska, Daniel Kierzkowski, Hugo Hofhuis, Alain Weber, George W. Bassel

Publikováno v: ELIFE
eLife
Barbier de Reuille, Pierre; Routier-Kierzkowska, Anne-Lise; Kierzkowski, Daniel; Bassel, George W; Schüpbach, Thierry; Tauriello, Gerardo; Bajpai, Namrata; Strauss, Sören; Weber, Alain; Kiss, Annamaria; Burian, Agata Maria; Hofhuis, Hugo; Sapala, Aleksandra; Lipowczan, Marcin; Heimlicher, Maria B; Robinson, Sarah Jane; Bayer, Emmanuelle M.; Basler, Konrad; Koumoutsakos, Petros; Roeder, Adrienne HK; ... (2015). MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife, 4, e05864. eLife Sciences Publications 10.7554/eLife.05864
eLife, Vol 4 (2015)
eLife, eLife Sciences Publication, 2015, 4, ⟨10.7554/eLife.05864⟩
eLife, 2015, 4, ⟨10.7554/eLife.05864⟩
Barbier de Reuille, P, Routier-Kierzkowska, A-L, Kierzkowski, D, Bassel, G W, Schüpbach, T, Tauriello, G, Bajpai, N, Strauss, S, Weber, A, Kiss, A, Burian, A, Hofhuis, H, Sapala, A, Lipowczan, M, Heimlicher, M B, Robinson, S, Bayer, E M, Basler, K, Koumoutsakos, P, Roeder, A H K, Aegerter-Wilmsen, T, Nakayama, N, Tsiantis, M, Hay, A, Kwiatkowska, D, Xenarios, I, Kuhlemeier, C & Smith, R S 2015, ' MorphoGraphX : A platform for quantifying morphogenesis in 4D ', eLIFE, vol. 4, 05864 . https://doi.org/10.7554/eLife.05864
Elife, vol. 4, pp. 05864
eLife, 4

Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually perf

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a8e0797a396a192479999c0eecfdf1b9
http://hdl.handle.net/20.500.12128/163

Fourier transform convolution integrals applied to generalized Born molecular volume

Autor: Vincent Zoete, Olivier Michielin, Thierry Schüpbach, Brice Tsakam-Sotché

Publikováno v: Journal of Computational Chemistry.

Generalized Born methods are currently among the solvation models most commonly used for biological applications. We reformulate the generalized Born molecular volume method initially described by (Lee et al, 2003, J Phys Chem, 116, 10606; Lee et al,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3fb6ce23bcf5e0c391a16163b9d59f29
https://doi.org/10.1002/jcc.21338