Bifidobacterium and Lactobacillus Probiotics and Gut Dysbiosis in Preterm Infants: The PRIMAL Randomized Clinical Trial.

Autor: Van Rossum T; European Molecular Biology Laboratory, Heidelberg, Germany., Haiß A; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Knoll RL; Department of Pediatrics, University Hospital Mainz, Mainz, Germany.; Experimental and Clinical Research Center, Max Delbrück Center for Molecular Medicine in the Helmholtz Association and Charité-Universitätsmedizin Berlin, Berlin, Germany., Marißen J; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.; Department of Pediatrics, University Hospital Würzburg, Würzburg, Germany., Podlesny D; European Molecular Biology Laboratory, Heidelberg, Germany., Pagel J; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.; Department of Pediatrics, University Hospital Hamburg-Eppendorf, Hamburg-Eppendorf, Germany., Bleskina M; Institute for Medical Biometry and Statistics, University of Lübeck, Lübeck, Germany., Vens M; Institute for Medical Biometry and Statistics, University of Lübeck, Lübeck, Germany., Fortmann I; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Siller B; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Ricklefs I; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Klopp J; Department of Pediatrics, University Hospital Mainz, Mainz, Germany., Hilbert K; Department of Pediatrics, University Hospital Mainz, Mainz, Germany., Meyer C; Department of Pediatrics, University Hospital Mainz, Mainz, Germany., Thielemann R; European Molecular Biology Laboratory, Heidelberg, Germany., Goedicke-Fritz S; Department of General Pediatrics and Neonatology, Saarland University Homburg, Germany., Kuntz M; Department of Pediatrics, University of Freiburg, Freiburg, Germany., Wieg C; Children's Hospital Aschaffenburg-Alzenau, Aschaffenburg, Germany., Teig N; Department of Pediatrics, University of Bochum, Bochum, Germany., Körner T; Children's Hospital Mitte Bremen, Bremen, Germany., Kribs A; Department of Pediatrics, University of Cologne, Cologne, Germany., Hudalla H; Department of Neonatology, University of Heidelberg, Heidelberg, Germany., Knuf M; Children's Hospital Horst-Schmidt-Kliniken Wiesbaden, Wiesbaden, Germany.; Children's Hospital Worms, Worms, Germany., Stein A; Department of Pediatrics I, University of Duisburg-Essen, Duisburg-Essen, Germany., Gille C; Department of Neonatology, University of Heidelberg, Heidelberg, Germany.; Department of Neonatology, University of Tübingen, Tübingen, Germany., Bagci S; Department of Neonatology, University of Bonn, Bonn, Germany., Dohle F; Children's Hospital Paderborn, Paderborn, Germany., Proquitté H; Department of Neonatology, University of Jena, Jena, Germany., Olbertz DM; Department of Neonatology, Hospital Rostock Südstadt, University of Rostock, Rostock, Germany., Schmidt E; Helios Children's Hospital Schwerin, Schwerin, Germany., Koch L; Children's Hospital Hamburg Wilhelmstift and Marien-Hospital Hamburg, Medical School Hamburg, Hamburg, Germany., Pirr S; Department of Neonatology, Allergology and Pediatric Pneumology, Hannover Medical School, Hannover, Germany., Rupp J; Department of Infectious Diseases and Microbiology, University of Lübeck, Lübeck, Germany.; German Center of Infectious Diseases Research, Hamburg-Lübeck-Borstel-Riems, Hamburg, Germany., Spiegler J; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.; Department of Pediatrics, University Hospital Würzburg, Würzburg, Germany., Kopp MV; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.; Department of Pediatrics, University Hospital of Berne, Berne, Switzerland., Göpel W; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Herting E; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany., Forslund SK; European Molecular Biology Laboratory, Heidelberg, Germany.; Experimental and Clinical Research Center, Max Delbrück Center for Molecular Medicine in the Helmholtz Association and Charité-Universitätsmedizin Berlin, Berlin, Germany., Viemann D; Department of Pediatrics, University Hospital Würzburg, Würzburg, Germany.; Department of Neonatology, Allergology and Pediatric Pneumology, Hannover Medical School, Hannover, Germany., Zemlin M; Department of General Pediatrics and Neonatology, Saarland University Homburg, Germany.; Center for Genderspecific Biology and Medicine, Saarland University Homburg, Homburg, Germany.; Center vor Digital Neurotechnologies Saar, Saarland University Homburg, Homburg, Germany., Bork P; European Molecular Biology Laboratory, Heidelberg, Germany., Gehring S; Department of Pediatrics, University Hospital Mainz, Mainz, Germany., König IR; Institute for Medical Biometry and Statistics, University of Lübeck, Lübeck, Germany., Henneke P; Department of Pediatrics, University of Freiburg, Freiburg, Germany.; Institute for Immunodeficiency, Centre for Chronic Immunodeficiency, University Medical Centre and Faculty of Medicine, University of Freiburg, Freiburg, Germany.; Institute for Infection Prevention and Control, University Medical Centre and Faculty of Medicine, University of Freiburg, Freiburg, Germany., Härtel C; Department of Pediatrics, University Hospital Schleswig-Holstein, Campus Lübeck, Lübeck, Germany.; Department of Pediatrics, University Hospital Würzburg, Würzburg, Germany.; German Center of Infectious Diseases Research, Hamburg-Lübeck-Borstel-Riems, Hamburg, Germany.

Publikováno v: JAMA pediatrics [JAMA Pediatr] 2024 Oct 01; Vol. 178 (10), pp. 985-995.

Usefulness of Heat Map Explanations for Deep-Learning-Based Electrocardiogram Analysis.

Autor: Storås AM; Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, 0167 Oslo, Norway.; Department of Computer Science, Oslo Metropolitan University, 0130 Oslo, Norway., Andersen OE; Department of Public Health, Aarhus University, 8000 Aarhus, Denmark.; Steno Diabetes Center, Aarhus University, 8000 Aarhus, Denmark., Lockhart S; Wellcome Trust-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK., Thielemann R; Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, 2200 Copenhagen, Denmark., Gnesin F; Department of Cardiology, North Zealand Hospital, 3400 Hillerød, Denmark., Thambawita V; Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, 0167 Oslo, Norway., Hicks SA; Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, 0167 Oslo, Norway., Kanters JK; Department of Biomedical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark., Strümke I; Department of Computer Science, Norwegian University of Science and Technology, 7491 Trondheim, Norway., Halvorsen P; Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, 0167 Oslo, Norway.; Department of Computer Science, Oslo Metropolitan University, 0130 Oslo, Norway., Riegler MA; Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, 0167 Oslo, Norway.; Department of Computer Science, UiT The Arctic University of Norway, 9037 Tromsø, Norway.

Publikováno v: Diagnostics (Basel, Switzerland) [Diagnostics (Basel)] 2023 Jul 11; Vol. 13 (14). Date of Electronic Publication: 2023 Jul 11.

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.

Autor: Van Rossum T; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany., Costea PI; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany., Paoli L; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8092 Zürich, Switzerland., Alves R; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany., Thielemann R; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany., Sunagawa S; Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8092 Zürich, Switzerland., Bork P; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.; Department of Bioinformatics, Biocenter, University of Würzburg, 97070 Würzburg, Germany.; Yonsei Frontier Lab (YFL), Yonsei University, Seoul 03722, South Korea.

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2022 Jan 27; Vol. 38 (4), pp. 1162-1164.

CoPixie, a novel algorithm for single-particle track colocalization, enables efficient quantification of telomerase dynamics at telomeres.

Autor: Prince, Samuel, Maguemoun, Kamélia, Ferdebouh, Mouna, Querido, Emmanuelle, Derumier, Amélie, Tremblay, Stéphanie, Chartrand, Pascal

Publikováno v: Nucleic Acids Research; 9/9/2024, Vol. 52 Issue 16, p9417-9430, 14p

Metapresence: a tool for accurate species detection in metagenomics based on the genome-wide distribution of mapping reads.

Autor: Sanguineti, Davide, Zampieri, Guido, Treu, Laura, Campanaro, Stefano

Publikováno v: MSystems; Aug2024, Vol. 9 Issue 8, p1-20, 20p