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The canonical HPA axis facilitates and maintains light adaptive behavior.

Autor: Lee H; Mayo Clinic., Shams S; Mayo Clinic., Dang Thi VH; Mayo Clinic., Boyum G; Mayo Clinic., Modhurima R; Mayo Clinic., Hall E; Mayo Clinic., Green I; Mayo Clinic., Cervantes E; Mayo Clinic., Miguez F; Iowa State University., Clark K; Mayo Clinic.

Publikováno v: Research square [Res Sq] 2023 Sep 06. Date of Electronic Publication: 2023 Sep 06.

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.

Autor: Gordon SP; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Contreras-Moreira B; Estación Experimental de Aula Dei (EEAD-CSIC), Zaragoza, Spain.; Fundación ARAID, Zaragoza, Spain.; Grupo de Bioquímica, Biofísica y Biología Computacional (BIFI, UNIZAR), Unidad Asociada al CSIC, Zaragoza, Spain., Levy JJ; DOE Joint Genome Institute, Berkeley, CA, 94720, USA.; University California, Berkeley, Berkeley, CA, 94720, USA., Djamei A; Gregor Mendel Institute of Molecular Plant Biology GmbH, Vienna, Austria.; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben. Stadt Seeland, Seeland, Germany., Czedik-Eysenberg A; Gregor Mendel Institute of Molecular Plant Biology GmbH, Vienna, Austria., Tartaglio VS; DOE Joint Genome Institute, Berkeley, CA, 94720, USA.; University California, Berkeley, Berkeley, CA, 94720, USA., Session A; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Martin J; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Cartwright A; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Katz A; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Singan VR; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Goltsman E; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Barry K; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Dinh-Thi VH; Organization and evolution of complex genomes (OECG) Institut national de la Recherche agronomique (INRA), Université d'Evry Val d'Essonne (UEVE), Evry, France., Chalhoub B; Organization and evolution of complex genomes (OECG) Institut national de la Recherche agronomique (INRA), Université d'Evry Val d'Essonne (UEVE), Evry, France.; Institute of Crop Science, Zhejiang University, 866 Yu-Hang-Tang Road, 310058, Hangzhou, China., Diaz-Perez A; Universidad de Zaragoza-Escuela Politécnica Superior de Huesca, 22071, Huesca, Spain.; Instituto de Genética, Facultad de Agronomía, Universidad Central de Venezuela, 2102, Maracay, Venezuela., Sancho R; Universidad de Zaragoza-Escuela Politécnica Superior de Huesca, 22071, Huesca, Spain., Lusinska J; Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, 40-032, Katowice, Poland., Wolny E; Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, 40-032, Katowice, Poland., Nibau C; Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, UK., Doonan JH; Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, UK., Mur LAJ; Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, UK., Plott C; HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA., Jenkins J; HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA., Hazen SP; Biology Department, University of Massachusetts Amherst, Amherst, MA, 01003, USA., Lee SJ; Biology Department, University of Massachusetts Amherst, Amherst, MA, 01003, USA., Shu S; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Goodstein D; DOE Joint Genome Institute, Berkeley, CA, 94720, USA., Rokhsar D; DOE Joint Genome Institute, Berkeley, CA, 94720, USA.; University California, Berkeley, Berkeley, CA, 94720, USA., Schmutz J; DOE Joint Genome Institute, Berkeley, CA, 94720, USA.; HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA., Hasterok R; Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, 40-032, Katowice, Poland., Catalan P; Grupo de Bioquímica, Biofísica y Biología Computacional (BIFI, UNIZAR), Unidad Asociada al CSIC, Zaragoza, Spain. pcatalan@unizar.es.; Universidad de Zaragoza-Escuela Politécnica Superior de Huesca, 22071, Huesca, Spain. pcatalan@unizar.es.; Institute of Biology, Tomsk State University, Tomsk, 634050, Russia. pcatalan@unizar.es., Vogel JP; DOE Joint Genome Institute, Berkeley, CA, 94720, USA. jpvogel@lbl.gov.; University California, Berkeley, Berkeley, CA, 94720, USA. jpvogel@lbl.gov.

Publikováno v: Nature communications [Nat Commun] 2020 Jul 29; Vol. 11 (1), pp. 3670. Date of Electronic Publication: 2020 Jul 29.

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.

Autor: Dinh Thi VH; Organization and evolution of complex genomes, Institut National de la Recherche agronomique, Université d'Evry Val d'Essonne, Evry, France., Coriton O; Unité Mixte de Recherches INRA, Agrocampus Rennes-Université Rennes 1, Institut de Génétique, Environnement et Protection des Plantes, Le Rheu, France., Le Clainche I; Organization and evolution of complex genomes, Institut National de la Recherche agronomique, Université d'Evry Val d'Essonne, Evry, France., Arnaud D; Organization and evolution of complex genomes, Institut National de la Recherche agronomique, Université d'Evry Val d'Essonne, Evry, France., Gordon SP; DOE Joint Genome Institute, Walnut Creek, United States of America., Linc G; Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,Martonvásár, Brunszvik u 2, Hungary., Catalan P; Department of Agriculture and Environmental Sciences, High Polytechnic School of Huesca, University of Zaragoza, Huesca, Spain.; Department of Botany, Institute of Biology, Tomsk State University, Tomsk, Russia., Hasterok R; Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia,Katowice, Poland., Vogel JP; DOE Joint Genome Institute, Walnut Creek, United States of America.; Department of Plant and Microbial Biology, University of California, Berkeley, United States of America., Jahier J; Unité Mixte de Recherches INRA, Agrocampus Rennes-Université Rennes 1, Institut de Génétique, Environnement et Protection des Plantes, Le Rheu, France., Chalhoub B; Organization and evolution of complex genomes, Institut National de la Recherche agronomique, Université d'Evry Val d'Essonne, Evry, France.; Institute of System and Synthetic Biology, Genopole, Centre National de la Recherche Scientifique, Université d'Evry Val d'Essonne, Université Paris-Saclay, Evry, France.

Publikováno v: PloS one [PLoS One] 2016 Dec 09; Vol. 11 (12), pp. e0167171. Date of Electronic Publication: 2016 Dec 09 (Print Publication: 2016).

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Autor: Chalhoub B; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France. chalhoub@evry.inra.fr., Denoeud F; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France. Université d'Evry Val d'Essone, UMR 8030, CP5706, Evry, France. Centre National de Recherche Scientifique (CNRS), UMR 8030, CP5706, Evry, France., Liu S; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China., Parkin IA; Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2, Canada. chalhoub@evry.inra.fr., Tang H; J. Craig Venter Institute, Rockville, MD 20850, USA. Center for Genomics and Biotechnology, Fujian Agriculture and Forestry, University, Fuzhou 350002, Fujian Province, China., Wang X; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA. Center of Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China., Chiquet J; Laboratoire de Mathématiques et Modélisation d'Evry-UMR 8071 CNRS/Université d'Evry val d'Essonne-USC INRA, Evry, France., Belcram H; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Tong C; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China., Samans B; Department of Plant Breeding, Research Center for Biosystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany., Corréa M; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Da Silva C; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Just J; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Falentin C; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Koh CS; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada., Le Clainche I; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Bernard M; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Bento P; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Noel B; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Labadie K; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Alberti A; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Charles M; INRA, Etude du Polymorphisme des Génomes Végétaux, US1279, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91057 Evry, France., Arnaud D; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Guo H; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA., Daviaud C; Laboratory for Epigenetics and Environment, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91000 Evry, France., Alamery S; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia., Jabbari K; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France. Cologne Center for Genomics, University of Cologne, Weyertal 115b, 50931 Köln, Germany., Zhao M; Department of Agronomy, Purdue University, WSLR Building B018, West Lafayette, IN 47907, USA., Edger PP; Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA., Chelaifa H; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Tack D; Department of Botany, University of British Columbia, Vancouver, BC, Canada., Lassalle G; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Mestiri I; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Schnel N; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Le Paslier MC; INRA, Etude du Polymorphisme des Génomes Végétaux, US1279, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91057 Evry, France., Fan G; Beijing Genome Institute-Shenzhen, Shenzhen 518083, China., Renault V; Fondation Jean Dausset-Centre d'Étude du Polymorphisme Humain, 27 rue Juliette Dodu, 75010 Paris, France., Bayer PE; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia., Golicz AA; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia., Manoli S; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia., Lee TH; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA., Thi VH; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Chalabi S; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Hu Q; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China., Fan C; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China., Tollenaere R; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia., Lu Y; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Battail C; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Shen J; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China., Sidebottom CH; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada., Wang X; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China., Canaguier A; Institut National de Recherche Agronomique (INRA)/Université d'Evry Val d'Essone, Unité de Recherche en Génomique Végétale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Crémieux, 91057 Evry, France., Chauveau A; INRA, Etude du Polymorphisme des Génomes Végétaux, US1279, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91057 Evry, France., Bérard A; INRA, Etude du Polymorphisme des Génomes Végétaux, US1279, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91057 Evry, France., Deniot G; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Guan M; College of Agronomy, Hunan Agricultural University, Changsha 410128, China., Liu Z; College of Agronomy, Hunan Agricultural University, Changsha 410128, China., Sun F; Beijing Genome Institute-Shenzhen, Shenzhen 518083, China., Lim YP; Molecular Genetics and Genomics Laboratory, Department of Horticulture, Chungnam National University, Daejeon-305764, South Korea., Lyons E; School of Plant Sciences, iPlant Collaborative, University of Arizona, Tucson, AZ, USA., Town CD; J. Craig Venter Institute, Rockville, MD 20850, USA., Bancroft I; Department of Biology, University of York, Wentworth Way, Heslington, York YO10 5DD, UK., Wang X; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China., Meng J; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China., Ma J; Department of Agronomy, Purdue University, WSLR Building B018, West Lafayette, IN 47907, USA., Pires JC; Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA., King GJ; Southern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia., Brunel D; INRA, Etude du Polymorphisme des Génomes Végétaux, US1279, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91057 Evry, France., Delourme R; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Renard M; INRA, Institut de Génétique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France., Aury JM; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France., Adams KL; Department of Botany, University of British Columbia, Vancouver, BC, Canada., Batley J; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia. School of Plant Biology, University of Western Australia, WA 6009, Australia., Snowdon RJ; Department of Plant Breeding, Research Center for Biosystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany., Tost J; Laboratory for Epigenetics and Environment, Centre National de Génotypage, CEA-IG, 2 rue Gaston Crémieux, 91000 Evry, France., Edwards D; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia. School of Plant Biology, University of Western Australia, WA 6009, Australia. chalhoub@evry.inra.fr., Zhou Y; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China. chalhoub@evry.inra.fr., Hua W; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China. chalhoub@evry.inra.fr., Sharpe AG; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada. chalhoub@evry.inra.fr., Paterson AH; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA. chalhoub@evry.inra.fr., Guan C; College of Agronomy, Hunan Agricultural University, Changsha 410128, China. chalhoub@evry.inra.fr., Wincker P; Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, BP5706, 91057 Evry, France. Université d'Evry Val d'Essone, UMR 8030, CP5706, Evry, France. Centre National de Recherche Scientifique (CNRS), UMR 8030, CP5706, Evry, France. chalhoub@evry.inra.fr.

Publikováno v: Science (New York, N.Y.) [Science] 2014 Aug 22; Vol. 345 (6199), pp. 950-3. Date of Electronic Publication: 2014 Aug 21.