Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas.

Autor: de Moraes L; Programa de Pós-Graduação em Ciências da Saúde, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40026-010, Brazil.; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Portilho MM; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Vrancken B; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium.; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, 1050 Bruxelles, Belgium., Van den Broeck F; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium.; Department of Biomedical Sciences, Antwerp Institute of Tropical Medicine, 2000 Antwerp, Belgium., Santos LA; Programa de Pós-Graduação em Ciências da Saúde, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40026-010, Brazil.; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Escola Bahiana de Medicina e Saúde Pública, Salvador 41150-100, Brazil., Cucco M; Programa de Pós-Graduação em Ciências da Saúde, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40026-010, Brazil.; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Tauro LB; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Instituto de Biología Subtropical, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Misiones, Puerto Iguazú N3370, Argentina., Kikuti M; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Silva MMO; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Campos GS; Laboratório de Virologia, Instituto de Ciências da Saúde, Universidade Federal da Bahia, Salvador 40231-300, Brazil., Reis MG; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Departamento de Patologia e Medicina Legal, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40110-100, Brazil., Barral A; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Barral-Netto M; Laboratório de Inflamação e Biomarcadores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil., Boaventura VS; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Hospital Santa Izabel, Salvador 40050-410, Brazil., Vandamme AM; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium.; Center for Global Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal., Theys K; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium., Ribeiro GS; Laboratório de Patologia e Biologia Molecular, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Departamento de Medicina Preventiva e Social, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40110-100, Brazil., Khouri R; Programa de Pós-Graduação em Ciências da Saúde, Faculdade de Medicina da Bahia, Universidade Federal da Bahia, Salvador 40026-010, Brazil.; Laboratório de Enfermidades Infecciosas Transmitidas por Vetores, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador 40296-710, Brazil.; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium.

Publikováno v: Viruses [Viruses] 2023 May 25; Vol. 15 (6). Date of Electronic Publication: 2023 May 25.

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal.

Autor: Seabra SG; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal., Libin PJK; Department of Computer Science, Artificial Intelligence Lab, Vrije Universiteit Brussel, Brussels 1050, Belgium., Theys K; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, KU Leuven, Herestraat 49 - box 1030, Leuven 3000, Belgium., Zhukova A; Institut Pasteur, Université Paris Cité, Unité Bioinformatique Evolutive, 25-28 rue du Dr Roux, Paris F-75015, France., Potter BI; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, KU Leuven, Herestraat 49 - box 1030, Leuven 3000, Belgium., Nebenzahl-Guimaraes H; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal., Gorbalenya AE; Department of Medical Microbiology, Leiden University Medical Center, Postbus 9600, Leiden 2300 RC, The Netherlands., Sidorov IA; Department of Medical Microbiology, Leiden University Medical Center, Postbus 9600, Leiden 2300 RC, The Netherlands., Pimentel V; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal., Pingarilho M; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal., de Vasconcelos ATR; National Laboratory for Scientific Computing, Av. Getulio Vargas, 333, Quitandinha, Petrópolis, Rio de Janeiro 25651-075, Brazil., Dellicour S; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, KU Leuven, Herestraat 49 - box 1030, Leuven 3000, Belgium., Khouri R; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, KU Leuven, Herestraat 49 - box 1030, Leuven 3000, Belgium., Gascuel O; Institut Pasteur, Université Paris Cité, Unité Bioinformatique Evolutive, 25-28 rue du Dr Roux, Paris F-75015, France., Vandamme AM; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal., Baele G; Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, KU Leuven, Herestraat 49 - box 1030, Leuven 3000, Belgium., Cuypers L; Department of Laboratory Medicine, University Hospitals Leuven, Herestraat 49, Leuven 3000, Belgium., Abecasis AB; Global Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Rua da Junqueira 100, Lisboa 1349-008, Portugal.

Publikováno v: Virus evolution [Virus Evol] 2022 Mar 29; Vol. 8 (1), pp. veac029. Date of Electronic Publication: 2022 Mar 29 (Print Publication: 2022).

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study

Autor: Gregson, J, Tang, M, Ndembi, N, Hamers, Rl, Marconi, Vc, Brooks, K, Theys, K, Arruda, M, Garcia, F, Monge, S, Kanki, Pj, Kumarasamy, N, Kerschberger, B, Mor, O, Charpentier, C, Todesco, E, Rokx, C, Gras, L, Halvas, Ek, Sunpath, H, Carlo, Dd, Antinori, A, Andreoni, M, Latini, A, Mussini, C, Aghokeng, A, Sonnerborg, A, Neogi, U, Fessel, Wj, Agolory, S, Yang, C, Blanco, Jl, Juma, Jm, Smit, E, Schmidt, D, Watera, C, Asio, J, Kirungi, W, Tostevin, A, Clumeck, N, Goedhals, D, Bester, Pa, Sabin, C, Mukui, I, Santoro, M, Perno, Cf, Hunt, G, Morris, L, Pillay, D, Schulter, E, Reyes-Teran, G, Romero, K, Avila-Rios, S, Sirivichayakul, S, Ruxrungtham, K, Mekprasan, S, Dunn, D, Kaleebu, P, Raizes, E, Kantor, R, Gupta, Rk, Rhee, S, Shafer, Rw, de Wit, Tfr, Diero, L, Camacho, R, Gunthard, Hf, Hoffmann, Cj, Di Carlo, D, El-Hay, T, van Vuuren, C, de Oliveira, T, Murakami-Ogasawara, A

Publikováno v: The Lancet. Infectious Diseases

Summary Background Antiretroviral therapy (ART) is crucial for controlling HIV-1 infection through wide-scale treatment as prevention and pre-exposure prophylaxis (PrEP). Potent tenofovir disoproxil fumarate-containing regimens are increasingly used

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::e49b76ec436755cb4c45f012d68c8419
https://hdl.handle.net/10668/18894

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Autor: Hufsky F; Friedrich-Schiller-University Jena, Germany., Lamkiewicz K; Friedrich-Schiller-University Jena, Germany., Almeida A; EMBL-EBI and the Wellcome Sanger Institute, UK., Aouacheria A; CNRS, France., Arighi C; Biocuration and Literature Access at PIR, USA., Bateman A; Protein Sequence Resources at EMBL-EBI, UK., Baumbach J; Technical University of Munich, Germany., Beerenwinkel N; Computational Biology at ETH Zurich, Switzerland., Brandt C; Institute of Infectious Disease and Infection Control at Jena University Hospital, Germany., Cacciabue M; Consejo Nacional de Investigaciones Científicas y Tócnicas (CONICET) working on FMDV virology at the Instituto de Agrobiotecnología y Biología Molecular (IABiMo, INTA-CONICET) and at the Departamento de Ciencias Básicas, Universidad Nacional de Luján (UNLu), Argentina., Chuguransky S; Pfam and InterPro databases, at the EMBL-EBI, UK., Drechsel O; bioinformatics department at the Robert Koch-Institute, Germany., Finn RD; Pfam and MGnify., Fritz A; Computational Biology of Infection Research group of Alice C. McHardy at the Helmholtz Centre for Infection Research, Germany., Fuchs S; bioinformatics department at the Robert Koch-Institute, Germany., Hattab G; Bioinformatics Division at Philipps-University Marburg, Germany., Hauschild AC; Philipps-University Marburg, Germany., Heider D; Data Science in Biomedicine at the Philipps-University of Marburg, Germany., Hoffmann M; Freie Universität Berlin, Germany., Hölzer M; Friedrich Schiller University Jena, Germany., Hoops S; Biocomplexity Institute and Initiative at the University of Virginia, USA., Kaderali L; Bioinformatics and head of the Institute of Bioinformatics at University Medicine Greifswald, Germany., Kalvari I; Senior Software Developer., von Kleist M; bioinformatics department at the Robert Koch-Institute, Germany., Kmiecinski R; bioinformatics department at the Robert Koch-Institute, Germany., Kühnert D; Max Planck Institute for the Science of Human History., Lasso G; Chandran Lab, Albert Einstein College of Medicine, USA., Libin P; University of Hasselt, Belgium., List M; Technical University of Munich, Germany., Löchel HF; Philipps-University Marburg, Germany., Martin MJ; EMBL-EBI, UK., Martin R; Philipps-University Marburg, Germany., Matschinske J; Chair of Experimental Bioinformatics at TU Munich, Germany., McHardy AC; Computational Biology of Infection Research Lab at the Helmholtz Centre for Infection Research in Braunschweig, Germany., Mendes P; Center for Quantitative Medicine of the University of Connecticut School of Medicine, USA., Mistry J; EMBL-EBI, UK., Navratil V; Bioinformatics and Systems Biology at the Rhône Alpes Bioinformatics core facility, Universitó de Lyon, France., Nawrocki EP; National Center for Biotechnology Information (NCBI)., O'Toole ÁN; Rambaut group at Edinburgh University, UK., Ontiveros-Palacios N; EMBL-EBI, UK., Petrov AI; EMBL-EBI, UK., Rangel-Pineros G; GLOBE Institute in the University of Copenhagen, Denmark., Redaschi N; Development of the Swiss-Prot group at the SIB for UniProt and SIB resources that cover viral biology (ViralZone)., Reimering S; Computational Biology of Infection Research group of Alice C. McHardy at the Helmholtz Centre for Infection Research., Reinert K; Freie Universität Berlin, Germany., Reyes A; Universidad de los Andes, Colombia., Richardson L; Sequence Families team at EMBL-EBI, UK., Robertson DL; MRC-University of Glasgow Centre for Virus Research, UK., Sadegh S; Chair of Experimental Bioinformatics at Technical University of Munich, Germany., Singer JB; MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK., Theys K; Rega institute of the University of Leuven, Belgium., Upton C; Department of Biochemistry and Microbiology, University of Victoria, Canada., Welzel M; Philipps-University Marburg, Germany., Williams L; Pfam and InterPro databases, at EMBL-EBI, UK., Marz M; Friedrich Schiller University Jena, Germany.

Publikováno v: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 642-663.

Exploring Dengue Infection in a Vaccinated Individual: Preliminary Molecular Diagnosis and Sequencing Insights.

Autor: Adelino, Talita Émile Ribeiro^1,2 (AUTHOR) alcantaraluiz42@gmail.com, Pedroso, Sílvia Helena Sousa Pietra¹ (AUTHOR) maurili15@gmail.com, Lima, Maurício¹ (AUTHOR) lmarcelotome@gmail.com, Tomé, Luiz Marcelo Ribeiro^1,2 (AUTHOR) natyroguiman@gmail.com, Guimarães, Natália Rocha^1,2 (AUTHOR) pauloeduss@gmail.com, Fonseca, Vagner^3,4,5 (AUTHOR) vagner.fonseca@gmail.com, Silva, Paulo Eduardo de Souza da¹ (AUTHOR) keldennmfmoreno@gmail.com, Moreno, Keldenn Melo Farias^1,6 (AUTHOR), Silva, Ana Cândida Araújo e⁷ (AUTHOR) ana.candida@ufvjm.edu.br, Pinheiro, Náthale Rodrigues⁷ (AUTHOR) nathale.pinheiro@ufvjm.edu.br, Souza, Carolina Senra Alves de⁸ (AUTHOR) carol.senraas@gmail.com, Alcantara, Luiz Carlos Junior^2,4 (AUTHOR), Giovanetti, Marta^2,4,9 (AUTHOR) talitadelino@gmail.com, Iani, Felipe Campos de Melo¹ (AUTHOR) talitadelino@gmail.com

Publikováno v: Viruses (1999-4915). Oct2024, Vol. 16 Issue 10, p1603. 8p.