Zobrazeno 1 - 10
of 99
pro vyhledávání: '"Theo Odijk"'
Publikováno v:
Nanoscale, 14(33), 12038-12047. ROYAL SOC CHEMISTRY
Nanoscale, 14 (33)
Nanoscale, 14 (33)
Confinement of biopolymers inside volumes with micro- or nanoscale lateral dimensions is ubiquitous in nature. Investigating the behavior of biopolymers in a confined environment is essential to improve our basic understanding in life sciences. In th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ad9cb387a9cce22631faacd09ce9868
http://hdl.handle.net/1887/3590691
http://hdl.handle.net/1887/3590691
Autor:
David C. Schwartz, Theo Odijk, G. Tsvid, Michael Place, Juan J. de Pablo, Juan P. Hernández-Ortiz, Prabu Ravindran, Kristy L. Kounovsky-Shafer, Shiguo Zhou, Konstantinos Potamousis, Kyubong Jo
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Significance Repeated sequences make up approximately two-thirds of the human genome, which become fully accountable when very large DNA molecules are analyzed. Long, single DNA molecules are problematic using common experimental techniques and fluid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35f09c681953dc01446383ba59fc25f6
https://doi.org/10.1073/pnas.1711069114
https://doi.org/10.1073/pnas.1711069114
Autor:
Theo Odijk
Publikováno v:
Physica A, 467, 180-183
Physica A
Physica A
An analogy is pointed out between a polymer chain fluctuating in a two-dimensional nematic background and a freely floating material line buffeted by a two-dimensional turbulent fluid in the inertial (Kraichnan) regime. Under certain conditions, the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::197f20e0800795d3761582de07a8babc
https://hdl.handle.net/1887/58341
https://hdl.handle.net/1887/58341
Autor:
Theo Odijk
Publikováno v:
Polymers, 9, 190
Polymers; Volume 9; Issue 6; Pages: 190
Polymers
Polymers; Volume 9; Issue 6; Pages: 190
Polymers
A simple theory of the unfolding kinetics of a semi-flexible polymer chain is presented in terms of a Kramers type picture for the energy of elongation. The hydrodynamic interactions are discussed in terms of slender body theory. It turns out that th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b87aa62ead199bbd7aba4d6b91e2eaee
http://hdl.handle.net/1887/58340
http://hdl.handle.net/1887/58340
Autor:
Anna S. Wegner, Theo Odijk, Conrad L. Woldringh, Kathelijne Wintraecken, Roberto Spurio, Renko de Vries
Publikováno v:
Journal of Structural Biology 194 (2016) 1
Journal of Structural Biology, 194(1), 129-137
Journal of Structural Biology, 194(1), 129-137
Escherichia coli nucleoids were compacted by the inert polymer polyethylene glycol (PEG) in the presence of the H-NS protein. The protein by itself appears to have little impact on the size of the nucleoids as determined by fluorescent microscopy. Ho
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4f5e3ed5a4bb5b0fa9044fda1899819
https://doi.org/10.1016/j.jsb.2016.02.009
https://doi.org/10.1016/j.jsb.2016.02.009
Publikováno v:
Journal of Structural Biology, 178(3), 260-269. Academic Press Inc.
Journal of Structural Biology 178 (2012) 3
Journal of Structural Biology, 178(3), 260-269
Journal of Structural Biology 178 (2012) 3
Journal of Structural Biology, 178(3), 260-269
Nucleoids were isolated by osmotic shock from Escherichia coli spheroplasts at relatively low salt concentrations and in the absence of detergents. Sucrose-protected cells, made osmotically sensitive by growth in the presence of ampicillin or by dige
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df3f94d26a3ebd968bc856c6ace40580
https://hdl.handle.net/11245/1.381733
https://hdl.handle.net/11245/1.381733
Autor:
Theo Odijk, Dalia M. Dhingra, Juan J. de Pablo, Rod Runnheim, Dan Forrest, Kyubong Jo, David C. Schwartz, Michael D. Graham
Publikováno v:
Proceedings of the National Academy of Sciences. 104:2673-2678
Molecular confinement offers new routes for arraying large DNA molecules, enabling single-molecule schemes aimed at the acquisition of sequence information. Such schemes can rapidly advance to become platforms capable of genome analysis if elements o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0dad7a5c9bed6bf0e5b7e47b086f671f
https://doi.org/10.1073/pnas.0611151104
https://doi.org/10.1073/pnas.0611151104
Publikováno v:
Journal of Structural Biology, 150, 226-232. Academic Press Inc.
To study the dynamics and organization of the DNA within isolated Escherichia coli nucleoids, we track the movement of a specific DNA region. Labeling of such a region is achieved using the Lac-O/Lac-I system. The Lac repressor-GFP fusion protein bin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1cd1cd0e455d29cdc2e0d64f09302f31
https://doi.org/10.1016/j.jsb.2005.02.004
https://doi.org/10.1016/j.jsb.2005.02.004
Autor:
Theo Odijk
Publikováno v:
Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences. 362:1497-1517
Several controversial issues concerning the packing of linear DNA in bacteriophages and globules are discussed. Exact relations for the osmotic pressure, capsid pressure and loading force are derived in terms of the hole size inside phages under the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db386c3ab367e333124e11390200fbe4
https://doi.org/10.1098/rsta.2004.1385
https://doi.org/10.1098/rsta.2004.1385
Autor:
Theo Odijk
Publikováno v:
Physica A: Statistical Mechanics and its Applications. 337:389-397
A theory of nonlinear convective depletion is set up as a nanosphere translates fast through a semidilute polymer solution. For nanospheres a self-consistent field theory in the Rouse approximation is often legitimate. A self-similar solution of the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::342a3f0b9601953496205c9e710f01ed
https://doi.org/10.1016/j.physa.2004.01.066
https://doi.org/10.1016/j.physa.2004.01.066