Long-distance tmFRET using bipyridyl- and phenanthroline-based ligands.

Autor: Gordon SE; Department of Physiology and Biophysics, University of Washington, Seattle, Washington. Electronic address: seg@uw.edu., Evans EGB; Department of Physiology and Biophysics, University of Washington, Seattle, Washington; Department of Chemistry, University of Washington, Seattle, Washington., Otto SC; Department of Physiology and Biophysics, University of Washington, Seattle, Washington., Tessmer MH; Department of Chemistry, University of Washington, Seattle, Washington., Shaffer KD; Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania., Gordon MT; Department of Physiology and Biophysics, University of Washington, Seattle, Washington., Petersson EJ; Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania., Stoll S; Department of Chemistry, University of Washington, Seattle, Washington., Zagotta WN; Department of Physiology and Biophysics, University of Washington, Seattle, Washington. Electronic address: zagotta@uw.edu.

Publikováno v: Biophysical journal [Biophys J] 2024 Jul 16; Vol. 123 (14), pp. 2063-2075. Date of Electronic Publication: 2024 Feb 02.

Site-directed spin label EPR studies of the structure and membrane interactions of the bacterial phospholipase ExoU.

Autor: Gies SL; Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.; Current address: Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA., Tessmer MH; Department of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.; Current address: Department of Chemistry, University of Washington, Seattle, WA, 98195, USA., Frank DW; Department of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, 53226, USA., Feix JB; Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.

Publikováno v: Applied magnetic resonance [Appl Magn Reson] 2024 Mar; Vol. 55 (1-3), pp. 279-295. Date of Electronic Publication: 2023 Oct 04.

Long-distance tmFRET using bipyridyl- and phenanthroline-based ligands.

Autor: Gordon SE; Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195., Evans EGB; Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195.; Department of Chemistry, University of Washington, Seattle, Washington 98195., Otto SC; Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195., Tessmer MH; Department of Chemistry, University of Washington, Seattle, Washington 98195., Shaffer KD; Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104., Gordon MT; Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195., Petersson EJ; Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104., Stoll S; Department of Chemistry, University of Washington, Seattle, Washington 98195., Zagotta WN; Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jan 03. Date of Electronic Publication: 2024 Jan 03.

Design of stimulus-responsive two-state hinge proteins.

Autor: Praetorius F; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Leung PJY; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Graduate Program in Molecular Engineering, University of Washington, Seattle, WA, USA., Tessmer MH; Department of Chemistry, University of Washington, Seattle, WA, USA., Broerman A; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Department of Chemical Engineering, University of Washington, Seattle, WA, USA., Demakis C; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Graduate Program in Biological Physics, Structure, and Design, University of Washington, Seattle, WA, USA., Dishman AF; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA.; Medical Scientist Training Program, Medical College of Wisconsin, Milwaukee, WI, USA., Pillai A; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Idris A; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Department of Bioengineering, University of Washington, Seattle, WA, USA., Juergens D; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Graduate Program in Molecular Engineering, University of Washington, Seattle, WA, USA., Dauparas J; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Li X; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Levine PM; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Lamb M; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Ballard RK; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Gerben SR; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Nguyen H; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Kang A; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Sankaran B; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bera AK; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Volkman BF; Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA., Nivala J; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA.; Molecular Engineering and Sciences Institute, University of Washington, Seattle, WA, USA., Stoll S; Department of Chemistry, University of Washington, Seattle, WA, USA., Baker D; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

Publikováno v: Science (New York, N.Y.) [Science] 2023 Aug 18; Vol. 381 (6659), pp. 754-760. Date of Electronic Publication: 2023 Aug 17.

chiLife: An open-source Python package for in silico spin labeling and integrative protein modeling.

Autor: Tessmer MH; Department of Chemistry, University of Washington, Seattle, Washington United States of America., Stoll S; Department of Chemistry, University of Washington, Seattle, Washington United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2023 Mar 31; Vol. 19 (3), pp. e1010834. Date of Electronic Publication: 2023 Mar 31 (Print Publication: 2023).