Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Tess Orvis"'
Autor:
Bernard E. Weissman, Michael B. Major, Yanfang Zheng, D. Neil Hayes, Jiren Zhang, Nisarg Desai, Tess Orvis, Darmood Wei, Vonn Walter, Kathleen Mulvaney, Travis Schrank, Vinh Nguyen, Shujie Song
Table shows genes with significantly altered expression by RNA-seq after BRG1 or BRM knockout.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::643943cc5686d6f830d6a691b8f4e5a1
https://doi.org/10.1158/1541-7786.22514494.v1
https://doi.org/10.1158/1541-7786.22514494.v1
Autor:
Bernard E. Weissman, Michael B. Major, Yanfang Zheng, D. Neil Hayes, Jiren Zhang, Nisarg Desai, Tess Orvis, Darmood Wei, Vonn Walter, Kathleen Mulvaney, Travis Schrank, Vinh Nguyen, Shujie Song
Supplementary Figure 1 shows BRG1 deficiency activates transcription of a subset of NRF2 target genes in second H358 BRG1 knockdown cell line; Supplementary Figure 2 shows western blot of BRG1 and BRM knockout samples used for RNA-seq.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e07f4f364f4fdbbc89bb95ade37fa60
https://doi.org/10.1158/1541-7786.22514500.v1
https://doi.org/10.1158/1541-7786.22514500.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Figure 2. This figure shows additional characterization of global nucleosomal positioning changes in Brg1 KD cell lines.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96835886a80ae96edf354fcae4bf02b4
https://doi.org/10.1158/0008-5472.22402784.v1
https://doi.org/10.1158/0008-5472.22402784.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Table 2. Differentially expressed genes were identified between BRG1 mutant and BRG1 wild-type NSCLC cell lines, as described in Materials and Methods. Using an FDR threshold of .025, a total of 135 genes were down-regulated in the BRG1
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d4708dace88c8fa501d93c89ff2a2a7
https://doi.org/10.1158/0008-5472.22402769
https://doi.org/10.1158/0008-5472.22402769
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Figure 3. This figure shows additional characterization of nucleosome positioning positions changes around transcription start sites in Brg1 KD cell lines.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ade4a35bcc0c3822aa0150f9ad1c4229
https://doi.org/10.1158/0008-5472.22402781.v1
https://doi.org/10.1158/0008-5472.22402781.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Figure 1. This figure shows validation of H358 and H441 Brg1 knockdown cell lines.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14167001d83c6e767f0505af8d83bb1d
https://doi.org/10.1158/0008-5472.22402787.v1
https://doi.org/10.1158/0008-5472.22402787.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Table and Figure Legends
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::70afd9d9af4df1f9bea81b35618d3986
https://doi.org/10.1158/0008-5472.22402766.v1
https://doi.org/10.1158/0008-5472.22402766.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Figure 4. The figure shows kernal-smoothed data for nucleosome positioning about transcription start sites in the Brg1 KD human NSCLC cell line and in mouse SNF5 and Brg1 KO cells.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::276e5591751d997ec5c3ec052e3ab2fb
https://doi.org/10.1158/0008-5472.22402778.v1
https://doi.org/10.1158/0008-5472.22402778.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Table 1. Differentially expressed genes were identified, as described in Material and Methods. Genes altered by BRG1 KD- Genes whose expression either increased or decreased in the H358 Brg1i.1 and H358 Brgi.2 cell lines; Upregulated an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d4718d097c9d1ddff8e49b780ae7483
https://doi.org/10.1158/0008-5472.22402772.v1
https://doi.org/10.1158/0008-5472.22402772.v1
Autor:
Bernard Weissman, Ian J. Davis, D. Neil Hayes, Michael B. Major, Nisarg Desai, Matthew D. Wilkerson, Joel Parker, Jeremy Simon, Shujie Song, Vonn Walter, Austin Hepperla, Tess Orvis
Supplementary Figure 5. This figure shows nucleosome positioning around 2 genes downregulated after Brg1 KD.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::311555d6a54488fd86592152e47483e8
https://doi.org/10.1158/0008-5472.22402775.v1
https://doi.org/10.1158/0008-5472.22402775.v1