Ten simple rules to cultivate transdisciplinary collaboration in data science.

Autor: Sahneh F; Data Science Institute, University of Arizona, Tucson, Arizona, United States of America.; Computer Science Department, University of Arizona, Tucson, Arizona, United States of America., Balk MA; BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America.; National Museum of Natural History, Department of Paleontology, Washington, District of Columbia, United States of America., Kisley M; Computer Science Department, University of Arizona, Tucson, Arizona, United States of America., Chan CK; Data Science Institute, University of Arizona, Tucson, Arizona, United States of America.; Steward Observatory and Department of Astronomy, University of Arizona, Tucson, Arizona, United States of America., Fox M; Data Science Institute, University of Arizona, Tucson, Arizona, United States of America.; CODATA Center of Excellence in Data for Society, Washington, District of Columbia, United States of America.; School of Information, University of Arizona, Tucson, Arizona, United States of America.; Native Nations Institute, University of Arizona, Tucson, Arizona, United States of America.; Center for Digital Society and Data Studies, University of Arizona, Tucson, Arizona, United States of America., Nord B; Fermi National Accelerator Laboratory, Batavia, Illinois, United States of America.; Kavli Institute for Cosmological Physics, University of Chicago, Chicago, Illinois, United States of America.; Department of Astronomy and Astrophysics, University of Chicago, Illinois, United States of America., Lyons E; BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America.; School of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America.; CyVerse, University of Arizona, Tucson, Arizona, United States of America., Swetnam T; BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America., Huppenkothen D; DIRAC Institute, Department of Astronomy, University of Washington, Seattle, Washington, United States of America.; eScience Institute, University of Washington, Seattle, Washington, United States of America., Sutherland W; Department of Human Centered Design and Engineering, University of Washington, Seattle, Washington, United States of America., Walls RL; BIO5 Institute, University of Arizona, Tucson, Arizona, United States of America., Quinn DP; Department of Geoscience, University of Wisconsin-Madison, Madison, Wisconsin, United States of America., Tarin T; Instituto de Ecología, Universidad Nacional Autónoma de México, Mexico City, Mexico., LeBauer D; College of Agriculture and Life Sciences, University of Arizona, Tucson, Arizona, United States of America., Ribes D; Department of Human Centered Design and Engineering, University of Washington, Seattle, Washington, United States of America., Birnie DP 3rd; Department of Materials Science and Engineering, Rutgers University, Piscataway, New Jersey, United States of America., Lushbough C; Biomedical Engineering Department, University of South Dakota, Sioux Falls, South Dakota, United States of America.; BioSNTR, Brookings, South Dakota, United States of America., Carr E; National Institute for Mathematical and Biological Synthesis, University of Tennessee, Knoxville, Tennessee, United States of America., Nearing G; Google Research, Mountain View, California, United States of America., Fischer J; Pervasive Technology Institute, Indiana University Bloomington, Bloomington, Indiana, United States of America.; JetStream Cloud, Indiana University Bloomington, Bloomington, Indiana, United States of America., Tyle K; Atmospheric & Environmental Sciences, University at Albany, Albany, New York, United States of America., Carrasco L; National Institute for Mathematical and Biological Synthesis, University of Tennessee, Knoxville, Tennessee, United States of America., Lang M; National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America., Rose PW; San Diego Supercomputer Center, University of California, San Diego, La Jolla, California, United States of America., Rushforth RR; School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, Arizona, United States of America., Roy S; Planet Labs, San Francisco, California, United States of America., Matheson T; NSF's National Optical-Infrared Astronomy Research Laboratory, Tucson, Arizona, United States of America., Lee T; CyVerse, University of Arizona, Tucson, Arizona, United States of America., Brown CT; Department of Population Health and Reproduction, University of California, Davis, Davis, California, United States of America., Teal TK; Dryad, Durham, North Carolina, United States of America., Papeș M; National Institute for Mathematical and Biological Synthesis, University of Tennessee, Knoxville, Tennessee, United States of America.; Ecology & Evolutionary Biology, University of Tennessee, Knoxville, Tennessee, United States of America., Kobourov S; Computer Science Department, University of Arizona, Tucson, Arizona, United States of America., Merchant N; Data Science Institute, University of Arizona, Tucson, Arizona, United States of America.; CyVerse, University of Arizona, Tucson, Arizona, United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2021 May 13; Vol. 17 (5), pp. e1008879. Date of Electronic Publication: 2021 May 13 (Print Publication: 2021).

Effects of nitrogen fertilization on soil CO2 emission and bacterial communities in maize field on the semiarid Loess Plateau.

Autor: Wang, Jinbin^1,2 (AUTHOR), Li, Lingling^1,2 (AUTHOR) lill@gsau.edu.cn, Xie, Junhong^1,2 (AUTHOR), Xie, Lihua^1,2 (AUTHOR), Effah, Zechariah^1,2,3 (AUTHOR), Luo, Zhuzhu^1,4 (AUTHOR), Nizamani, Mir Muhammad⁵ (AUTHOR)

Publikováno v: Plant & Soil. Oct2024, Vol. 503 Issue 1/2, p123-139. 17p.

Diametral influence of deoxynivalenol (DON) and deepoxy-deoxynivalenol (DOM-1) on the growth of Campylobacter jejuni with consequences on the bacterial transcriptome.

Autor: Awad, Wageha A.¹ (AUTHOR) wageha.awad@vetmeduni.ac.at, Grenier, Bertrand² (AUTHOR), Ruhnau, Daniel¹ (AUTHOR), Hess, Claudia¹ (AUTHOR), Schatzmayr, Dian² (AUTHOR), Hess, Michael¹ (AUTHOR)

Publikováno v: BMC Microbiology. 8/16/2024, Vol. 24 Issue 1, p1-11. 11p.

Ten simple rules for building and maintaining a responsible data science workflow.

Autor: Stoudt, Sara¹ (AUTHOR) sas072@bucknell.edu, Jernite, Yacine² (AUTHOR), Marshall, Brandeis³ (AUTHOR), Marwick, Ben⁴ (AUTHOR), Sharan, Malvika⁵ (AUTHOR), Whitaker, Kirstie⁵ (AUTHOR), Danchev, Valentin⁶ (AUTHOR) sas072@bucknell.edu

Publikováno v: PLoS Computational Biology. 7/18/2024, Vol. 20 Issue 7, p1-19. 19p.

IMA Genome – F19: A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras

Autor: Aylward, Janneke^1,2 (AUTHOR), Wilson, Andi M.¹ (AUTHOR), Visagie, Cobus M.¹ (AUTHOR), Spraker, Joseph³ (AUTHOR), Barnes, Irene¹ (AUTHOR), Buitendag, Carla¹ (AUTHOR), Ceriani, Callin¹ (AUTHOR), Del Mar Angel, Lina¹ (AUTHOR), du Plessis, Deanné¹ (AUTHOR), Fuchs, Taygen¹ (AUTHOR), Gasser, Katharina⁴ (AUTHOR), Krämer, Daniella¹ (AUTHOR), Li, WenWen⁵ (AUTHOR), Munsamy, Kiara¹ (AUTHOR), Piso, Anja¹ (AUTHOR), Price, Jenna-Lee¹ (AUTHOR), Sonnekus, Byron¹ (AUTHOR), Thomas, Chanel¹ (AUTHOR), van der Nest, Ariska¹ (AUTHOR), van Dijk, Alida¹ (AUTHOR)

Publikováno v: IMA Fungus. 6/3/2024, Vol. 15 Issue 1, p1-20. 20p.