RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Autor: Vera Thole, Jean-Etienne Bassard, Ricardo Ramírez-González, Martin Trick, Bijan Ghasemi Afshar, Dario Breitel, Lionel Hill, Alexandre Foito, Louise Shepherd, Sabine Freitag, Cláudia Nunes dos Santos, Regina Menezes, Pilar Bañados, Michael Naesby, Liangsheng Wang, Artem Sorokin, Olga Tikhonova, Tatiana Shelenga, Derek Stewart, Philippe Vain, Cathie Martin

Publikováno v: BMC Genomics, Vol 20, Iss 1, Pp 1-23 (2019)

Abstract Background Flavonoids are produced in all flowering plants in a wide range of tissues including in berry fruits. These compounds are of considerable interest for their biological activities, health benefits and potential pharmacological appl

Externí odkaz: https://doaj.org/article/44fe88644fc94685a83ae7ae8c09b38e

Analysis of miRNA polymorphism during the selected developmental processes of flax

Autor: Lucia HLAVAČKOVÁ, Janka Nôžková, Elizaveta POROKHOVINOVA, Nina BRUTCH, Tatiana SHELENGA, Marie Bjelková, Katarína RAŽNÁ

Publikováno v: Journal of Central European Agriculture, Vol 17, Iss 3, Pp 707-724 (2016)

MicroRNAs represent small non-coding RNAs that play important role in regulating gene expression under various biotic and abiotic stresses as well as in different developmental stages of plants. They are involved in wide variety of biological and met

Externí odkaz: https://doaj.org/article/d548228026b145da90d9c9ea0b368f2b

Metabolomic profiling in evaluation of cultivated oat species with different ploidy level

Autor: Elena V. Blinova, Tatiana Shelenga, Alexandr Gnutikov, Alexey V. Konarev, Igor G. Loskutov

Publikováno v: BIO Web of Conferences, Vol 36, p 01026 (2021)

The article presents biochemical characteristics identified during the analysis of metabolomic profiles. The object of this study was the landraces of cultivated oat species Avena strigosa Schreb., A. abyssinica Hochst. and A. sativa L. with differen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3300a6613934a1170abbf79095af5593
https://doi.org/10.1051/bioconf/20213601026

Analysis of miRNA polymorphism during the selected developmental processes of flax

Autor: Nina Brutch, Katarína Ražná, Marie Bjelková, Tatiana Shelenga, Janka Nôžková, Elizaveta A. Porokhovinova, Lucia Hlavačková

Publikováno v: Journal of Central European Agriculture, Vol 17, Iss 3, Pp 707-724 (2016)

MicroRNAs represent small non-coding RNAs that play important role in regulating gene expression under various biotic and abiotic stresses as well as in different developmental stages of plants. They are involved in wide variety of biological and met

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dcefd6fd2cb2f8afef7b4fbb981272d7
https://doi.org/10.5513/jcea01/17.3.1767

BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

Autor: Shanshan Li, Mahdi Doostmohammadi, Markus Schmidt, Roberto Ferro, Camillo Meinhart, Morten H. H. Nørholm, Wei Wei, Marcel Ottens, Pilar Bañados, Ricardo Andrade, Mounir Benkoulouche, Derek Stewart, Martin Trick, Nuno Faria, Oscar P. Kuipers, Li-Jin Wang, Gonçalo Garcia, Marcelo Silva, Nicola Love, Ana Solopova, Wolfgang Kerbe, Björn Hamberger, David Méndez Sevillano, Laurent Bulteau, Armando M. Fernandes, Philippe Vain, Alice Julien-Laferriere, Liangsheng Wang, Harald Heider, Delphine Parrot, Cathie Martin, Joana Godinho-Pereira, Paula Gaspar, Barbara Avila, Michael Vogt, Dario Breitel, Jan Marienhagen, Ana Vila-Santa, Arnaud Mary, Artem Sorokin, Carolina Jardim, Jean-Etienne Bassard, Rex M. Brennan, Rafael S. Costa, Caroline Rousseau, Nicolai Kallscheuer, Louise V. T. Shepherd, Alexey Dudnik, A. Filipa Almeida, Vera Thole, Shang Su, Cheng-Yong Feng, André Veríssimo, Vincent Mazurek, Ana Rita Silva, Jochen Förster, Steen Gustav Stahlhut, Michael Naesby, András Hartmann, Alberto Marchetti-Spaccamela, Tatiana Shelenga, Céline Chanforan, Finn Thyge Okkels, Cláudia N. Santos, Olga Tikhonova, Alexandre Foito, Ana Rute Neves, Regina Menezes, Isabel Rocha, Inês Costa, Adelaide Braga, Olivier Simon, Rita Rosado-Ramos, Joana Oliveira, Michael Bott, Leen Stougie, Diane Barbay, Lei Pei, Sabine Freitag, Susana Vinga, Sandra Youssef, Patrícia Ferreira

Publikováno v: Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Dudnik, A, Almeida, A F, Andrade, R, Avila, B, Bañados, P, Barbay, D, Bassard, J E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Sevillano, D M, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M F, Dos Santos, C N, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Neves, A R & Forster, J 2018, ' BacHBerry:: BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews, 17, 291-326
Dudnik, A, Almeida, A F, Andrade, R, Bañados, P, Barbay, D, Bassard, J-E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Méndez Sevillano, D, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M-F, Nunes dos Santos, C, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Rute Neves, A & Forster, J 2018, ' BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews
Phytochemistry Reviews, 2017, pp.1-36. ⟨10.1007/s11101-017-9532-2⟩
Dudnik, A, Almeida, A F, Andrade, R, Avila, B, Bañados, P, Barbay, D, Bassard, J E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Sevillano, D M, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M F, dos Santos, C N, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Neves, A R & Forster, J 2018, ' BacHBerry : BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews, Springer Verlag, 2017, pp.1-36. ⟨10.1007/s11101-017-9532-2⟩

BACterial Hosts for production of Bioactive phenolics from bERRY fruits (BacHBerry) was a 3-year project funded by the Seventh Framework Programme (FP7) of the European Union that ran between November 2013 and October 2016. The overall aim of the pro

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbec5ef8e68758eef7bbc9e69ce53dbd