Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Tao Ju Cui"'
Autor:
Tao Ju Cui, Misha Klein, Jorrit W. Hegge, Stanley D. Chandradoss, John van der Oost, Martin Depken, Chirlmin Joo
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Argonaute protein is loaded with small RNA and scans long stretch of sequences to find complementary target sites. Here, using single-molecule FRET and kinetic modelling, the authors showed that prokaryotic Argonaute protein binds target DNA loosely
Externí odkaz:
https://doaj.org/article/030bdb4c6a084d029bfa423bfee6d58d
Autor:
Mike Filius, Adithya N. Ananth, Chirlmin Joo, Tao Ju Cui, John van der Oost, M.W. Docter, Jorrit W. Hegge
Publikováno v:
Nano Letters
Nano letters, 4, 20, 2264-2270
Nano Letters 20 (2020) 4
Nano Letters, 20(4), 2264-2270
Nano Letters: a journal dedicated to nanoscience and nanotechnology, 20(4)
Nano letters, 4, 20, 2264-2270
Nano Letters 20 (2020) 4
Nano Letters, 20(4), 2264-2270
Nano Letters: a journal dedicated to nanoscience and nanotechnology, 20(4)
Super-resolution imaging allows for visualization of cellular structures on a nanoscale level. DNA-PAINT (DNA Point Accumulation In Nanoscale Topology) is a super-resolution method that depends on the binding and unbinding of DNA imager strands. The
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6519dd5152cd5d1aabb2e84a05256d2
http://europepmc.org/articles/PMC7146856
http://europepmc.org/articles/PMC7146856
Autor:
Maabur Sow, Tao Ju Cui, Anne Plochowietz, Barak Gilboa, Abhishek Mazumder, Achillefs N. Kapanidis, Bo Jing
Publikováno v:
Biophysical Journal
Single-molecule fluorescence has been highly instrumental in elucidating interactions and dynamics of biological molecules in the past two decades. Single-molecule fluorescence experiments usually rely on one of two detection geometries, either confo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49b80148abdf40b3b0bf4193e48fceb8
https://doi.org/10.1016/j.bpj.2019.10.033
https://doi.org/10.1016/j.bpj.2019.10.033
Publikováno v:
Optics Express, 29(18)
Localization microscopy offers resolutions down to a single nanometer, but currently requires additional dedicated hardware or fiducial markers to reduce resolution loss from drift of the sample. Drift estimation without fiducial markers is typically
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3722f0f6673d4a73527cff5773721c8d
https://doi.org/10.1101/2021.03.30.437682
https://doi.org/10.1101/2021.03.30.437682
Rapidly finding a specific nucleic-acid sequences in a large pool of competing off-targets is a fundamental challenge overcome by all living systems. To optimize the search and beat the diffusion limit, it is known that searchers should spend time sl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a6e5c6c5dc0c72a86ce882d593211085
https://doi.org/10.1101/2020.06.04.133629
https://doi.org/10.1101/2020.06.04.133629
Autor:
Stijn Sonneveld, Yao Xiao, Chirlmin Joo, Marvin E. Tanenbaum, Ian J. MacRae, Dion de Steenwinkel, Suzan Ruijtenberg, Tao Ju Cui, Ive Logister
Publikováno v:
Nature Structural & Molecular Biology. 28:533-533
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9b542e67d1e7a681f49f842f50abd1ec
https://doi.org/10.1038/s41594-021-00610-9
https://doi.org/10.1038/s41594-021-00610-9
Autor:
Tao Ju Cui, Chirlmin Joo
Publikováno v:
RNA Biol
Argonaute (Ago) proteins are of key importance in many cellular processes. In eukaryotes, Ago can induce translational repression followed by deadenylation and degradation of mRNA molecules through base pairing of microRNAs (miRNAs) with a complement
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d9acbf550246b2fcb4f0acabc4738631
https://pubmed.ncbi.nlm.nih.gov/31068066
https://pubmed.ncbi.nlm.nih.gov/31068066
Autor:
Jorrit W. Hegge, Tao Ju Cui, John van der Oost, Stanley D. Chandradoss, Chirlmin Joo, Misha Klein, Martin Depken
Publikováno v:
Nature Communications, 10(1)
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Nature Communications 10 (2019)
Nature Communications
Nature Communications, 10
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Nature Communications 10 (2019)
Nature Communications
Nature Communications, 10
Argonaute (Ago) proteins are key players in both gene regulation (eukaryotes) and host defense (prokaryotes). Acting on single-stranded nucleic-acid substrates, Ago relies on base pairing between a small nucleic-acid guide and its complementary targe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1de4f7fde0c64c2ce99e4d2c1be55696
http://resolver.tudelft.nl/uuid:a82e91c9-9112-49a5-8758-6f4a6616292a
http://resolver.tudelft.nl/uuid:a82e91c9-9112-49a5-8758-6f4a6616292a
Autor:
Jorrit W. Hegge, Tao Ju Cui, Daan C. Swarts, Stanley D. Chandradoss, Chirlmin Joo, Martin Jinek, Jeroen Kneppers, John van der Oost
Publikováno v:
Nucleic acids research, 47(11), 5809-5821
Nucleic Acids Research
Nucleic acids research, 47(11)
Nucleic acids research 47 (2019) 11
Nucleic Acids Research
Nucleic acids research, 47(11)
Nucleic acids research 47 (2019) 11
Prokaryotic Argonaute proteins (pAgos) constitute a diverse group of endonucleases of which some mediate host defense by utilizing small interfering DNA guides (siDNA) to cleave complementary invading DNA. This activity can be repurposed for programm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b11d525155503433f6481ba5aec0ed88
https://research.wur.nl/en/publications/dna-guided-dna-cleavage-at-moderate-temperatures-by-clostridium-b
https://research.wur.nl/en/publications/dna-guided-dna-cleavage-at-moderate-temperatures-by-clostridium-b
Publikováno v:
Biophysical Journal. 109(10):2113-2125
The observation of biological processes at the molecular scale in real time requires high spatial and temporal resolution. Magnetic tweezers are straightforward to implement, free of radiation or photodamage, and provide ample multiplexing capability
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35ec8c5e2db0ae3ce8ce1243665c38d9