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Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses.

Autor: Duckett DJ; Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, United States of America., Calder K; College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, United States of America., Sullivan J; Department of Biological Sciences, University of Idaho, Moscow, ID, United States of America., Tank DC; Department of Botany, University of Wyoming, Laramie, WY, United States of America., Carstens BC; Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, United States of America.

Publikováno v: PloS one [PLoS One] 2023 Nov 30; Vol. 18 (11), pp. e0291941. Date of Electronic Publication: 2023 Nov 30 (Print Publication: 2023).

Phylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades.

Autor: Morales-Briones DF; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, Minnesota, 55108-1095, USA.; Systematics, Biodiversity and Evolution of Plants, Department of Biology I, Ludwig-Maximilians-Universität München, Menzinger Strasse 67, 80638, Munich, Germany., Lin N; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, Minnesota, 55108-1095, USA.; College of Life Science, Henan Agricultural University, 63 Nongye Road, Zhengzhou, Henan, 450002, China., Huang EY; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, Minnesota, 55108-1095, USA., Grossenbacher DL; Biological Sciences Department, California Polytechnic State University, 1 Grand Avenue, San Luis Obispo, California, 93407, USA., Sobel JM; Department of Biological Sciences, Binghamton University (State University of New York), 4400 Vestal Parkway E, Binghamton, New York, 13902, USA., Gilmore CD; Department of Biological Sciences, Binghamton University (State University of New York), 4400 Vestal Parkway E, Binghamton, New York, 13902, USA., Tank DC; Department of Botany & Rocky Mountain Herbarium, University of Wyoming, 1000 E. University Avenue, Laramie, Wyoming, 82071, USA., Yang Y; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, Minnesota, 55108-1095, USA.

Publikováno v: American journal of botany [Am J Bot] 2022 Jun; Vol. 109 (6), pp. 1035-1046. Date of Electronic Publication: 2022 Jun 05.

Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae).

Autor: Morales-Briones DF; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, MN 55108, USA.; Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive MS 3051, Moscow, ID 83844, USA., Gehrke B; University Gardens, University Museum, University of Bergen, Mildeveien 240, 5259 Hjellestad, Norway., Huang CH; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity and Ecological Engineering, Institute of Plant Biology, Center of Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai 200433, China., Liston A; Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331, USA., Ma H; Department of Biology, the Huck Institute of the Life Sciences, the Pennsylvania State University, 510D Mueller Laboratory, University Park, PA 16802 USA., Marx HE; Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109-1048, USA.; Museum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA., Tank DC; Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive MS 3051, Moscow, ID 83844, USA., Yang Y; Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, MN 55108, USA.

Publikováno v: Systematic biology [Syst Biol] 2021 Dec 16; Vol. 71 (1), pp. 190-207.

Can functional genomic diversity provide novel insights into mechanisms of community assembly? A pilot study from an invaded alpine streambed.

Autor: Marx HE; Department of Biology & Museum of Southwestern Biology University of New Mexico Albuquerque New Mexico USA., Carboni M; Department of Sciences Università Roma TRE Roma Italy., Douzet R; CNRS Lautaret Jardin du Lautaret Université Grenoble Alpes Grenoble France., Perrier C; CNRS Lautaret Jardin du Lautaret Université Grenoble Alpes Grenoble France., Delbart F; CNRS Lautaret Jardin du Lautaret Université Grenoble Alpes Grenoble France., Thuiller W; Laboratoire d'Ecologie Alpine (LECA) CNRS Université Grenoble Alpes Université Savoie Mont Blanc Grenoble France., Lavergne S; Laboratoire d'Ecologie Alpine (LECA) CNRS Université Grenoble Alpes Université Savoie Mont Blanc Grenoble France., Tank DC; Department of Biological Sciences University of Idaho Moscow Idaho USA.; Institute for Bioinformatics and Evolutionary Studies University of Idaho Moscow Idaho USA.; Stillinger Herbarium University of Idaho Moscow Idaho USA.; Present address: Department of Botany and Rocky Mountain Herbarium University of Wyoming Laramie WY 82072-3165 USA.

Publikováno v: Ecology and evolution [Ecol Evol] 2021 Aug 04; Vol. 11 (17), pp. 12075-12091. Date of Electronic Publication: 2021 Aug 04 (Print Publication: 2021).