DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

Autor: Elemento Olivier, Tang Man-Hung, da Piedade Isabelle

Publikováno v: BMC Bioinformatics, Vol 10, Iss 1, p 388 (2009)

Abstract Background The accurate determination of transcription factor binding affinities is an important problem in biology and key to understanding the gene regulation process. Position weight matrices are commonly used to represent the binding pro

Externí odkaz: https://doaj.org/article/b76131a71bb14e0a873becd2e1f05e35

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First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023.

Autor: Rasmussen, Morten, Møller, Frederik Trier, Gunalan, Vithiagaran, Baig, Sharmin, Bennedbæk, Marc, Engbo Christiansen, Lasse, Sierra Cohen, Arieh, Ellegaard, Kirsten, Fomsgaard, Anders, Træholt Franck, Kristina, Balle Larsen, Nicolai, Graakjær Larsen, Tine, Lassaunière, Ria, Polacek, Charlotta, Gammelby Qvesel, Amanda, Sieber, Raphael Niklaus, Rasmussen, Lasse Dam, Stegger, Marc, Spiess, Katja, Tang, Man-Hung Eric

Publikováno v: Eurosurveillance (15607917); 9/7/2023, Vol. 28 Issue 36, p4-8, 5p

Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

Autor: Michaelsen, Thomas Y., Bennedbæk, Marc, Christiansen, Lasse E., Jørgensen, Mia S.F., Møller, Camilla H., Sørensen, Emil A., Knutsson, Simon, Brandt, Jakob, Jensen, Thomas B.N., Chiche-Lapierre, Clarisse, Collados, Emilio F., Sørensen, Trine, Petersen, Celine, Le-Quy, Vang, Sereika, Mantas, Hansen, Frederik T., Rasmussen, Morten, Fonager, Jannik, Karst, Søren M., Marvig, Rasmus L., Stegger, Marc, Sieber, Raphael N., Skov, Robert, Legarth, Rebecca, Krause, Tyra G., Fomsgaard, Anders, Andersen, Kasper S., Andersen, Martin H., Berg, Amalie, Bielidt, Susanne R., Dall, Sebastian M., Dvarionaite, Erika, Hansen, Susan H., Jørgensen, Vibeke R., Kirkegaard, Rasmus H., Saei, Wagma, Nicolajsen, Trine B., Østergaard, Stine K., Brøndum, Rasmus F., Bøgsted, Martin, Hose, Katja, Sagi, Tomer, Pakanec, Miroslaw, Fuglsang-Damgaard, David, Mølvadgaard, Mette, Krarup, Henrik, Svarrer, Christina W., Christiansen, Mette T., Ingham, Anna C., Johannesen, Thor B., Basterrechea, Martín, Lilje, Berit, Ellegaard, Kirsten, Matusevicius, Povilas, Christoffersen, Lars B., Tang, Man Hung E., Ng, Kim L., Edslev, Sofie M., Baig, Sharmin, Larsen, Ole H., Skipper, Kristian A., Vang, Søren, Handberg, Kurt J., Nielsen, Marc T.K., Kobel, Carl M., Andersen, Camilla, Tarpgaard, Irene H., Ellermann-Eriksen, Svend, Castruita, José A.S., Schneider, Uffe V., Jacobsen, Nana G., Andersen, Christian, Pedersen, Martin S., Schønning, Kristian, Kirkby, Nikolai, Nielsen, Lene, Nilsson, Line L., Friis, Martin B., Sundelin, Thomas, Hansen, Thomas A., Skov, Marianne N., Sydenham, Thomas V., Nielsen, Xiaohui C., Schouw, Christian H., Jensen, Anders, Marmolin, Ea S., Coia, John E., Andersen, Dorte T., Albertsen, Mads

Publikováno v: Michaelsen, T Y, Bennedbæk, M, Christiansen, L E, Jørgensen, M S F, Møller, C H, Sørensen, E A, Knutsson, S, Brandt, J, Jensen, T B N, Chiche-Lapierre, C, Collados, E F, Sørensen, T, Petersen, C, Le-Quy, V, Sereika, M, Hansen, F T, Rasmussen, M, Fonager, J, Karst, S M, Marvig, R L, Stegger, M, Sieber, R N, Skov, R, Legarth, R, Krause, T G, Fomsgaard, A & Albertsen, M 2022, ' Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark ', Genome Medicine, vol. 14, no. 1, 47 . https://doi.org/10.1186/s13073-022-01045-7
Michaelsen, T Y, Bennedbæk, M, Christiansen, L E, Jørgensen, M S F, Møller, C H, Sørensen, E A, Knutsson, S, Brandt, J, Jensen, T B N, Chiche-Lapierre, C, Collados, E F, Sørensen, T, Petersen, C, Le-Quy, V, Sereika, M, Hansen, F T, Rasmussen, M, Fonager, J, Karst, S M, Marvig, R L, Stegger, M, Sieber, R N, Skov, R, Legarth, R, Krause, T G, Fomsgaard, A, The Danish COVID-19 Genome Consortium (DCGC), Andersen, K S, Andersen, M H, Berg, A, Bielidt, S R, Dall, S M, Dvarionaite, E, Hansen, S H, Jørgensen, V R, Kirkegaard, R H, Saei, W, Nicolajsen, T B, Østergaard, S K, Brøndum, R F, Bøgsted, M, Hose, K, Sagi, T, Pakanec, M, Fuglsang-Damgaard, D, Mølvadgaard, M, Krarup, H, Svarrer, C W, Christiansen, M T, Ingham, A C, Johannesen, T B, Basterrechea, M, Lilje, B, Ellegaard, K, Matusevicius, P, Christoffersen, L B, Tang, M H E, Ng, K L, Edslev, S M, Baig, S, Larsen, O H, Skipper, K A, Vang, S, Handberg, K J, Nielsen, M T K, Kobel, C M, Andersen, C, Tarpgaard, I H, Ellermann-Eriksen, S, Castruita, J A S, Schneider, U V, Jacobsen, N G, Andersen, C, Pedersen, M S, Schønning, K, Kirkby, N, Nielsen, L, Nilsson, L L, Friis, M B, Sundelin, T, Hansen, T A, Skov, M N, Sydenham, T V, Nielsen, X C, Schouw, C H, Jensen, A, Marmolin, E S, Coia, J E, Andersen, D T & Albertsen, M 2022, ' Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark ', Genome Medicine, vol. 14, no. 1, 47 . https://doi.org/10.1186/s13073-022-01045-7
The Danish COVID-19 Genome Consortium (DCGC) & Albertsen, M 2022, ' Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark ', Genome Medicine, vol. 14, no. 1, 47, pp. 1-13 . https://doi.org/10.1186/s13073-022-01045-7

Background In early 2021, the SARS-CoV-2 lineage B.1.1.7 (Alpha variant) became dominant across large parts of the world. In Denmark, comprehensive and real-time test, contact-tracing, and sequencing efforts were applied to sustain epidemic control.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ba4f597d3107d19abeba06ffd8b622c
https://orbit.dtu.dk/en/publications/d4ee83d3-1835-45e8-ad47-e535115bd0ce