Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Autor: Golob, Jonathan L., Oskotsky, Tomiko T., Tang, Alice S., Roldan, Alennie, Chung, Verena, Ha, Connie W.Y., Wong, Ronald J., Flynn, Kaitlin J., Parraga-Leo, Antonio, Wibrand, Camilla, Minot, Samuel S., Oskotsky, Boris, Andreoletti, Gaia, Kosti, Idit, Bletz, Julie, Nelson, Amber, Gao, Jifan, Wei, Zhoujingpeng, Chen, Guanhua, Tang, Zheng-Zheng, Novielli, Pierfrancesco, Romano, Donato, Pantaleo, Ester, Amoroso, Nicola, Monaco, Alfonso, Vacca, Mirco, De Angelis, Maria, Bellotti, Roberto, Tangaro, Sabina, Kuntzleman, Abigail, Bigcraft, Isaac, Techtmann, Stephen, Bae, Daehun, Kim, Eunyoung, Jeon, Jongbum, Joe, Soobok, Theis, Kevin R., Ng, Sherrianne, Lee, Yun S., Diaz-Gimeno, Patricia, Bennett, Phillip R., MacIntyre, David A., Stolovitzky, Gustavo, Lynch, Susan V., Albrecht, Jake, Gomez-Lopez, Nardhy, Romero, Roberto, Stevenson, David K., Aghaeepour, Nima, Tarca, Adi L., Costello, James C., Sirota, Marina

Publikováno v: In Cell Reports Medicine 16 January 2024 5(1)

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Predictive Modeling Leveraging Electronic Health Records Identifies Early Predictors of Alzheimer's Disease.

Autor: Tang, Alice S, Rankin, Katherine P, Cerano, Gabriel, Miramontes, Silvia, Mills, Hunter, Oskotsky, Tomiko, Zeng, Billy, Nelson, Charlotte, Soman, Karthik, Woldemariam, Sarah, Li, Yaqiao, Lee, Albert M, Miller, Zachary, Allen, Isabel Elaine, Sanders, Stephan, Baranzini, Sergio, Sirota, Marina

Publikováno v: Alzheimer's & Dementia: The Journal of the Alzheimer's Association; Dec2023 Supplement 15, Vol. 19, p1-3, 3p

Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research.

Autor: Golob JL; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA., Oskotsky TT; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Tang AS; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Roldan A; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Chung V; Sage Bionetworks, Seattle, WA. USA., Ha CWY; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA., Wong RJ; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA., Flynn KJ; Sage Bionetworks, Seattle, WA. USA., Parraga-Leo A; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Wibrand C; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Minot SS; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA., Andreoletti G; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Kosti I; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Bletz J; Sage Bionetworks, Seattle, WA. USA., Nelson A; Sage Bionetworks, Seattle, WA. USA., Gao J; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Wei Z; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Chen G; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Tang ZZ; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Novielli P; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Romano D; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Pantaleo E; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA., Amoroso N; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA., Monaco A; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Vacca M; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., De Angelis M; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Bellotti R; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Tangaro S; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Kuntzleman A; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA., Bigcraft I; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Techtmann S; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Bae D; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA., Kim E; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Jeon J; Sage Bionetworks, Seattle, WA. USA., Joe S; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Theis KR; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA., Ng S; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA., Lee Li YS; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Diaz-Gimeno P; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Bennett PR; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., MacIntyre DA; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Stolovitzky G; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Lynch SV; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA., Albrecht J; Sage Bionetworks, Seattle, WA. USA., Gomez-Lopez N; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Romero R; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Stevenson DK; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA., Aghaeepour N; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA., Tarca AL; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Costello JC; Division of Infectious Disease. Department of Internal Medicine. University of Michigan. Ann Arbor, MI. USA.; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.; Sage Bionetworks, Seattle, WA. USA.; Benioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.; March of Dimes Prematurity Research Center at Stanford University, Stanford, CA USA.; Data Core, Shared Resources, Fred Hutchinson Cancer Center. Seattle, WA. USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI. USA., Sirota M; March of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.; Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.; Department of Pediatrics. University of California San Francisco, San Francisco, CA. USA.

Publikováno v: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Apr 11. Date of Electronic Publication: 2023 Apr 11.